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The map label for this gene is 218929989

Identifier: 218929989

GI number: 218929989

Start: 3278986

End: 3279546

Strand: Reverse

Name: 218929989

Synonym: YPO2935

Alternate gene names: NA

Gene position: 3279546-3278986 (Counterclockwise)

Preceding gene: 218929990

Following gene: 218929988

Centisome position: 70.47

GC content: 42.78

Gene sequence:

>561_bases
ATGATTTTAATTAGGCTAAGTATGAATAAAAGTATCCGAGGGGTTTACCGGGCGACACAGTACTTATTTTTGGTACTGGT
AACGTTATTGACGATAGCCTGTAGTTCAAAAGTGCAACCTGAAAAGGCTGAAAAGCTTACCGTCGAAATCGCGACAGCAG
CGGATATTAATCCGAATGATAAAGGGGTGGCGAACCCGCTAAGGATTGCACTTTATACACTCAAGAGCACCGATGAATTT
CAGTCGAGTGATTTCTTCACTATCACTGAAGAAAATACGCCATCGCTAAAAGAACAAATGGATAACGTGTTTGACCGGAT
TATGTTGCCAAGCGAGACCAAAAAAATAGAGCTGACACTTGATGCTGGCGTTACTGCTATCGGCATCGTGGCTGCTTATC
GTGAAATTGAACAGGCGGAGTGGAAAGCGGTTATTTATCCGTTGCCCAAAAAACGCGTGGATCCTTGGTATAAAAAAATG
TGGCCAGGGCAAGACCAACAAGATCCGATCATGAAGGTACGCGTTGAGCGTCTGTCAATATCAATTAAAGAAATGGATTA
A

Upstream 100 bases:

>100_bases
AGCGTGCAGGGATGTCAATGAGCCCCGTCATGATGCCGTTAATCTGTAGCTGAAAATATTATTGTGGATAAGGCTTAACG
TTTTTTTAATTAGGCTAAGT

Downstream 100 bases:

>100_bases
GCCGTGAGAACTAACAAAGTCGTTTGGAGTGAGGGGCTTTTTCTTCGCCCACAACTTTTTCAACAGCAAGAGCGCTATCT
TGAATATTACGCCCATAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Lipoprotein; Replication/Virulence Associated Protein; Type VI Secretion Lipoprotein/VasD; Outer Membrane Lipoprotein; T6ss N; SciN Protein

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MILIRLSMNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPNDKGVANPLRIALYTLKSTDEF
QSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTLDAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKM
WPGQDQQDPIMKVRVERLSISIKEMD

Sequences:

>Translated_186_residues
MILIRLSMNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPNDKGVANPLRIALYTLKSTDEF
QSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTLDAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKM
WPGQDQQDPIMKVRVERLSISIKEMD
>Mature_186_residues
MILIRLSMNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPNDKGVANPLRIALYTLKSTDEF
QSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTLDAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKM
WPGQDQQDPIMKVRVERLSISIKEMD

Specific function: Unknown

COG id: COG3521

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21213; Mature: 21213

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILIRLSMNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPND
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCC
KGVANPLRIALYTLKSTDEFQSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTL
CCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
DAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKMWPGQDQQDPIMKVRVERLSI
CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHEE
SIKEMD
EEEECC
>Mature Secondary Structure
MILIRLSMNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPND
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCC
KGVANPLRIALYTLKSTDEFQSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTL
CCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
DAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKMWPGQDQQDPIMKVRVERLSI
CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHEE
SIKEMD
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA