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The map label for this gene is rlpB

Identifier: 218929690

GI number: 218929690

Start: 2930275

End: 2930898

Strand: Reverse

Name: rlpB

Synonym: YPO2609

Alternate gene names: 218929690

Gene position: 2930898-2930275 (Counterclockwise)

Preceding gene: 218929691

Following gene: 218929689

Centisome position: 62.98

GC content: 52.08

Gene sequence:

>624_bases
GTGCGACATCGTATTCTGACGTTGTTGCTGGGGTTGGCGGTGCTGGTCACCGCTGGCTGCGGTTTTAATCTGCGGGGCAC
CACTCAGGTGCCAACTGAGTTGCAAAAATTATTGCTGGAGAGCAGCGATCCCTATGGCCCGTTAGCCAGGTCTATACGTC
AACAACTACGTTTAAATAACGTGACTATTGTTGATGACGCCATGCGTAAAGATATACCGACGCTGCGGATCATCGGCTCA
TCCGAAAGCCAAGAGACAGTGTCTATCTTCCGTAACGGTGTCGCGGCCGAGAATCAGTTAGTGCTACATGTACAGGCGCA
GGTGTTGATTCCGGGCCATGATATTTACCCATTGCAGGTCAATGTGTTCCGCACATTCTTTGATAACCCGTTAACGGCGT
TAGCCAAAGAGGCTGAAGCCGAGGTGCTTCGTCAAGAAATGCGTGAGCAAGCCGCCCAGCAGTTAGTGCGTCAGTTACTG
ACGGTACATGCGGCAGAAGTTAAAAACACGCAGAAAAATGGTGATAAACCGGTGAGTGATGCCAACGCGGCTCAGGGCTC
AACCCCGACAGCCGTCAATGAAACCACTCTCGGCGAACCTGCCGTCAGTACCTCAGCCAAATGA

Upstream 100 bases:

>100_bases
ACTTGGTGGCTAAATATCTGGATGGCGTTACTGTACGTAAAGTCATCTATGTCCCTGGCAAATTGCTTAATCTGGTTGTG
GGTTAAGTCAAGGAGGCGTT

Downstream 100 bases:

>100_bases
TCCGGATTTACCCTGAACAACTTGTCGCGCAGCTCCATGAGGGGCTACGCGCTTGTTATCTATTGTGTGGCAATGAACCC
TTGTTGCTACAGGAAAGTCA

Product: LPS-assembly lipoprotein RlpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MRHRILTLLLGLAVLVTAGCGFNLRGTTQVPTELQKLLLESSDPYGPLARSIRQQLRLNNVTIVDDAMRKDIPTLRIIGS
SESQETVSIFRNGVAAENQLVLHVQAQVLIPGHDIYPLQVNVFRTFFDNPLTALAKEAEAEVLRQEMREQAAQQLVRQLL
TVHAAEVKNTQKNGDKPVSDANAAQGSTPTAVNETTLGEPAVSTSAK

Sequences:

>Translated_207_residues
MRHRILTLLLGLAVLVTAGCGFNLRGTTQVPTELQKLLLESSDPYGPLARSIRQQLRLNNVTIVDDAMRKDIPTLRIIGS
SESQETVSIFRNGVAAENQLVLHVQAQVLIPGHDIYPLQVNVFRTFFDNPLTALAKEAEAEVLRQEMREQAAQQLVRQLL
TVHAAEVKNTQKNGDKPVSDANAAQGSTPTAVNETTLGEPAVSTSAK
>Mature_207_residues
MRHRILTLLLGLAVLVTAGCGFNLRGTTQVPTELQKLLLESSDPYGPLARSIRQQLRLNNVTIVDDAMRKDIPTLRIIGS
SESQETVSIFRNGVAAENQLVLHVQAQVLIPGHDIYPLQVNVFRTFFDNPLTALAKEAEAEVLRQEMREQAAQQLVRQLL
TVHAAEVKNTQKNGDKPVSDANAAQGSTPTAVNETTLGEPAVSTSAK

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family

Homologues:

Organism=Escherichia coli, GI1786860, Length=173, Percent_Identity=50.8670520231214, Blast_Score=192, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPTE_YERP3 (A7FKW1)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001401889.1
- ProteinModelPortal:   A7FKW1
- SMR:   A7FKW1
- STRING:   A7FKW1
- GeneID:   5385950
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_2927
- eggNOG:   COG2980
- HOGENOM:   HBG644504
- OMA:   TAGCGFH
- ProtClustDB:   PRK10796
- BioCyc:   YPSE349747:YPSIP31758_2927-MONOMER
- HAMAP:   MF_01186
- InterPro:   IPR007485

Pfam domain/function: PF04390 RplB

EC number: NA

Molecular weight: Translated: 22570; Mature: 22570

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHRILTLLLGLAVLVTAGCGFNLRGTTQVPTELQKLLLESSDPYGPLARSIRQQLRLNN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
VTIVDDAMRKDIPTLRIIGSSESQETVSIFRNGVAAENQLVLHVQAQVLIPGHDIYPLQV
EEEECHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCEEEEHH
NVFRTFFDNPLTALAKEAEAEVLRQEMREQAAQQLVRQLLTVHAAEVKNTQKNGDKPVSD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ANAAQGSTPTAVNETTLGEPAVSTSAK
CCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRHRILTLLLGLAVLVTAGCGFNLRGTTQVPTELQKLLLESSDPYGPLARSIRQQLRLNN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
VTIVDDAMRKDIPTLRIIGSSESQETVSIFRNGVAAENQLVLHVQAQVLIPGHDIYPLQV
EEEECHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCEEEEHH
NVFRTFFDNPLTALAKEAEAEVLRQEMREQAAQQLVRQLLTVHAAEVKNTQKNGDKPVSD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ANAAQGSTPTAVNETTLGEPAVSTSAK
CCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA