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The map label for this gene is rbsC [H]

Identifier: 218929664

GI number: 218929664

Start: 2904205

End: 2905233

Strand: Direct

Name: rbsC [H]

Synonym: YPO2583

Alternate gene names: 218929664

Gene position: 2904205-2905233 (Clockwise)

Preceding gene: 218929663

Following gene: 218929665

Centisome position: 62.41

GC content: 54.03

Gene sequence:

>1029_bases
ATGCTACAGCCGCTTTCCAAGCCCCAGGCATCGGTAAAAAGCGCGATGCGTTTTGACCCGATCACTTTTTTTGAACGCTT
CGGCGTCCTGATTTTTATGTTCCTGCTGCTGATTTTCTTCCAATTGCAGAACAGTAATTTTCTCTCAGAACGCAATATTT
TCAACATCCTAACTGAGGTATCCATCTACGGCATCATGGCCGTGGGCATGACCTTCGTCATCCTGACCGCGGGTATTGAT
CTTTCCGTCGGCTCAATTCTTGCGGTGTCCGCCATGACAGCCGCTTATGTGATTAAAGGCGATAACTTTACCACCATTGA
CCCCAACGCTTGGGGCGGCATGAGTTGGCTAATTGGCCTCAGTATTTGTCTGGCAATGGGCACCCTTATTGGTTTTTTGC
AGGGCTTGGGGGTCACGCGTCTGCGTCTGCCGCCCTTTATTGTCACCCTGGGTGGGATGACCATCTGGCGTGGCCTGACG
TTGGTGATTAACGACGGTGCCCCTATCGCCGGGTTTGATGCAGGCTACCGCTGGTGGGGGCGCGGGGACTTACTCGGTAT
TTCAATACCCATTTGGATTTTTGCCATTGTCGCGATAGCCGGTTATCTGGCGCTGCACAAAACCCGCTGGGGGCGTTTCG
TCTATGCGATTGGCGGTAATCCTGAAGCGGCACGTTTGGCGGGAGTTAATGTGAAACGCGTGCTGGTCAGCGTCTACGTG
GTGATCGGCTGCCTTGCCGGGTTGGCGGGTTTCATCCTAAGCGCCCGGCTGGGCAGTGCTGAAGCGGTAGCCGGGATCTC
GTTTGAATTGCGGGTGATTGCCTCGGTGGTGATTGGTGGCACTTCACTGATGGGCGGCTACGGGCGTATCGGCGGCACCA
TTATTGGCTCCATCATCATGGGGATCTTGATTAACGGTTTGGTGCTGATGAATGTTTCGGCTTACTACCAGCAAATTATC
ACCGGCCTGATCATCGTATTGGCGGTGGCCTTTGATACCTACGCCAAGAACCGTCGCGGCGCGCTGTAA

Upstream 100 bases:

>100_bases
TCACTGGAGAGATTCACGGTGATGACGCCAGCGAAGAACGGCTGATGACCATGATGACCATCAATCATAACGCCTTAAAT
GCCGCCTAACGGAGCACCTC

Downstream 100 bases:

>100_bases
TACGTTCATGTCAGGAGTGAATGATGAAAGAAGTGCGTATTGGATTGATTGGTACCGGGTATATCGGTAAGGCGCACGCC
ATTGCCTACGCACAGGCACC

Product: sugar transport system permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGID
LSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLT
LVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
VIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQII
TGLIIVLAVAFDTYAKNRRGAL

Sequences:

>Translated_342_residues
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGID
LSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLT
LVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
VIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQII
TGLIIVLAVAFDTYAKNRRGAL
>Mature_342_residues
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGID
LSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLT
LVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
VIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQII
TGLIIVLAVAFDTYAKNRRGAL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=45.3376205787781, Blast_Score=221, Evalue=8e-59,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=38.4146341463415, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI145693152, Length=327, Percent_Identity=35.1681957186544, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788896, Length=334, Percent_Identity=32.9341317365269, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=32.6975476839237, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=37.8737541528239, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=36.3914373088685, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=33.4586466165414, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787793, Length=290, Percent_Identity=31.3793103448276, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787794, Length=282, Percent_Identity=28.7234042553192, Blast_Score=98, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36559; Mature: 36559

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEV
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
SIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCEEEECCCCCCHHHHHHHH
SICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWG
HHHHHHHHHHHHHHCCCCCEEECCCCEEECCCHHHHCCEEEEEECCCCCCCCCCCCEEEC
RGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
CCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHEECCHHHHHHHHHHH
VIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIM
HHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHH
GILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEV
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
SIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCEEEECCCCCCHHHHHHHH
SICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWG
HHHHHHHHHHHHHHCCCCCEEECCCCEEECCCHHHHCCEEEEEECCCCCCCCCCCCEEEC
RGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV
CCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHEECCHHHHHHHHHHH
VIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIM
HHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHH
GILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]