Click here to switch to the map view.

The map label for this gene is ypeR [H]

Identifier: 218929546

GI number: 218929546

Start: 2754768

End: 2755505

Strand: Reverse

Name: ypeR [H]

Synonym: YPO2457

Alternate gene names: 218929546

Gene position: 2755505-2754768 (Counterclockwise)

Preceding gene: 218929547

Following gene: 218929544

Centisome position: 59.21

GC content: 33.33

Gene sequence:

>738_bases
ATGATAATTAATTTTTTTGATAATGAAAGCATTAATGAAGATATAAAAAATTATATCCAACGGAGGATAAAAGCCTATGG
CAATATCCGCTATTCTTATTTGCTAATGAATAAAAAAGTACCGCTACATCCGGCGATCATATCGAACTACCCGCTAGACT
GGGTAAAAAAGTACAAGAAGAATAGTTATCACCTGATCGACCCTGTGATTTTGACCGCCAAAGGCAAAGTCGCACCATTT
GCATGGGATGACAATTCAGTCATCAATATAAAATCAACTGATTCGGCCGTGTTCAATCTCGCCAGAGAATATAATATTGT
TAATGGTTATACCTTCGTTCTTCATGATAATAACAATAATATGGCGACCTTGAATGTTTCAAGTGGCGATGATGATAGTA
TTTTTTTCGATGAAAGCATCGAGGTGAACAAAGAAAAAATACAAATGTTACTTATTTTTATTCACGATAAAATGCTTGGT
CTATATAATAAAAGTCATCATGAAAACAACACGTTGAATAAAAAAGAGAATAAAAGAGAAATTTTCTCTCCTCGGGAAAA
TGAAATTCTGTACTGGGCCAGTGTAGGAAAGACTTACTCTGAAATTGCGATAATTTTAGGTATTAAGAAAAGCACAGTGA
AATTTCATATTGGTAATATTGTTAGGAAGTTAGGTGTTCTCAATGCCAAACATGCAATAAGACTTGGCATTGAGTTACAA
TTGATCAAACCTATTTAG

Upstream 100 bases:

>100_bases
GTGATGCAGTGATCACATTTTTTTACATCTTGATTTTCATTGAAAAAAATGTGTAAAAATTGTATGGTTGCATGCAGGGA
TAAAGTAAATTTGGTCTGCT

Downstream 100 bases:

>100_bases
TCATACTGGGCACAACAAGCGGCCAGCTTGCAAGTGTATGAGTATCAATATTGTGCACTCGTTGTATTTTCCTGATCAAC
TGCTGTTGGCTATTACTGTC

Product: quorum-sensing transcriptional activator YpeR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MIINFFDNESINEDIKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNYPLDWVKKYKKNSYHLIDPVILTAKGKVAPF
AWDDNSVINIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNVSSGDDDSIFFDESIEVNKEKIQMLLIFIHDKMLG
LYNKSHHENNTLNKKENKREIFSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQ
LIKPI

Sequences:

>Translated_245_residues
MIINFFDNESINEDIKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNYPLDWVKKYKKNSYHLIDPVILTAKGKVAPF
AWDDNSVINIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNVSSGDDDSIFFDESIEVNKEKIQMLLIFIHDKMLG
LYNKSHHENNTLNKKENKREIFSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQ
LIKPI
>Mature_245_residues
MIINFFDNESINEDIKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNYPLDWVKKYKKNSYHLIDPVILTAKGKVAPF
AWDDNSVINIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNVSSGDDDSIFFDESIEVNKEKIQMLLIFIHDKMLG
LYNKSHHENNTLNKKENKREIFSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQ
LIKPI

Specific function: Probable transcriptional activator. Binds to autoinducer molecules OHHL and HHL [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 28330; Mature: 28330

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINFFDNESINEDIKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNYPLDWVKKYKK
CEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHCCCCHHHHHHHHC
NSYHLIDPVILTAKGKVAPFAWDDNSVINIKSTDSAVFNLAREYNIVNGYTFVLHDNNNN
CCEEEECEEEEEECCCEEEEEECCCCEEEEECCCHHHHHHHHHCEEECCEEEEEEECCCC
MATLNVSSGDDDSIFFDESIEVNKEKIQMLLIFIHDKMLGLYNKSHHENNTLNKKENKRE
EEEEEECCCCCCCEEECCCCCCCHHHHEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHH
IFSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQ
HCCCCCCCEEEEEECCCCHHEEEEEEEECCCEEEEHHHHHHHHHHCCCCCCEEEEEEEEE
LIKPI
EECCC
>Mature Secondary Structure
MIINFFDNESINEDIKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNYPLDWVKKYKK
CEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHCCCCHHHHHHHHC
NSYHLIDPVILTAKGKVAPFAWDDNSVINIKSTDSAVFNLAREYNIVNGYTFVLHDNNNN
CCEEEECEEEEEECCCEEEEEECCCCEEEEECCCHHHHHHHHHCEEECCEEEEEEECCCC
MATLNVSSGDDDSIFFDESIEVNKEKIQMLLIFIHDKMLGLYNKSHHENNTLNKKENKRE
EEEEEECCCCCCCEEECCCCCCCHHHHEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHH
IFSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQ
HCCCCCCCEEEEEECCCCHHEEEEEEEECCCEEEEHHHHHHHHHHCCCCCCEEEEEEEEE
LIKPI
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7494483 [H]