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The map label for this gene is pqrA [H]

Identifier: 218928862

GI number: 218928862

Start: 1982535

End: 1982921

Strand: Reverse

Name: pqrA [H]

Synonym: YPO1737

Alternate gene names: 218928862

Gene position: 1982921-1982535 (Counterclockwise)

Preceding gene: 218928864

Following gene: 218928860

Centisome position: 42.61

GC content: 41.6

Gene sequence:

>387_bases
ATGTCACAAGAAAATCATCTCGCGTTAGTCTGCGCCCTCAGTAAATGGGTCGAAACCCACCTAGGGCGGGTCATCTATCT
TGAAGAGTTAGCCGCATACTCAGGTTATTCGCTTTGGCATATGCAAAAAATATTTAAAGATGTCACTGGCGTGTCACTGG
GTAAGTACATACGGGAGAGGCTATTAGCAGGCGCTGTTTATCAGCTAAGGAGCAGTGATAGCACTATTTTCGATATCGCT
TTAGATTTTGGTTTTGGTTCACAATCACACTTTACGTATATGTTTAGAAAGCATTACGGCATCACTCCGTATGACTTCAG
ACAAAACACAGATATTGACCTTAATATTGCATTACCTTTACATGCTATTCACCAAAAACAGGCCTGA

Upstream 100 bases:

>100_bases
CCGCACATTGGGTATAATCCAGGAGAGTTCAGTGTTTTATGTTGTTCGATTCAACTTGTGTATACTGCAACACTCCCAAC
CAGAAAAAACAGACTAAATA

Downstream 100 bases:

>100_bases
TAACTTCTTGTTATCACTGTTCATCGGTAATACAGAAGGTGCCTATAATACATAAAATAGCTACCCGGTGAATAACACGC
TTCAGTCCTCTTTATAACAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRERLLAGAVYQLRSSDSTIFDIA
LDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPLHAIHQKQA

Sequences:

>Translated_128_residues
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRERLLAGAVYQLRSSDSTIFDIA
LDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPLHAIHQKQA
>Mature_127_residues
SQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRERLLAGAVYQLRSSDSTIFDIAL
DFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPLHAIHQKQA

Specific function: Regulatory factor of blood coagulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=38.8349514563107, Blast_Score=94, Evalue=4e-21,
Organism=Escherichia coli, GI1790857, Length=107, Percent_Identity=40.1869158878505, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI87081928, Length=108, Percent_Identity=36.1111111111111, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1790339, Length=108, Percent_Identity=29.6296296296296, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 14729; Mature: 14598

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRER
CCCCCCEEHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
LLAGAVYQLRSSDSTIFDIALDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCHHEEEEECCCCCCCCCCCCCCCEEEEEECCH
HAIHQKQA
HHHHCCCC
>Mature Secondary Structure 
SQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTGVSLGKYIRER
CCCCCEEHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
LLAGAVYQLRSSDSTIFDIALDFGFGSQSHFTYMFRKHYGITPYDFRQNTDIDLNIALPL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCHHEEEEECCCCCCCCCCCCCCCEEEEEECCH
HAIHQKQA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7726514 [H]