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The map label for this gene is cheD [H]

Identifier: 218928807

GI number: 218928807

Start: 1911021

End: 1912694

Strand: Direct

Name: cheD [H]

Synonym: YPO1675

Alternate gene names: 218928807

Gene position: 1911021-1912694 (Clockwise)

Preceding gene: 218928806

Following gene: 218928808

Centisome position: 41.06

GC content: 48.03

Gene sequence:

>1674_bases
ATGTTCAAGCGTATGAAAGTGGTTACCAGCCTGCTGCTGGTATTAGTATTATTTGGTGCCTTACAACTGGTATCCGGCGG
GCTTTTTTTCAAATCATTGCAGAATGACCAGGAAAACTTCAACGTTTTACAAGTTATTCGCCAGCAACAATCGGTATTGA
ATGAAAGCTGGGTCTATCTGTTACAAACACGCAATACGTTAAACCGTGCCGGTGTTCGTTACATGATGGATATTAACCAT
ACTGGCAGTGGCCCTACGGTGAAGGACCTTATCTCTTCGGCTAAAGGGACGCTAAGCGTCGCGGAAGACCGCTTCAAACG
TTACGAAAAAATCCCACAAAATAGCAGTCAGGATCCAGAAGGCGCCAAAAAATTAAAACAGTCCTACGAGGAATATTTTA
GTGCCTTAACCGAACTGATTAATTTGATGGAAACGAACAAAATCAATGAGTTCTTCAATCACCCCACCACCAGTTTCCAA
AATGAATTTGAGCAAAATTACAACAACTATCTGACGCAAAATGACGGACTGTATGATTCGGCGGTCGAGGACAGTAATCA
ATCCTTTAGCTTTGCTATGGGCGTGGTTATTACTGTACTGGTCGTCGTATTAGTGATGATGCTCCTTGTCTGGCTGGGGA
TGCAACAGATCTTAATTCACCCCCTCAACCACCTGATTGCACACATTAAACATATTGCCAACGGTGATTTGACGCAAAAT
ATTGAAGTTCATGGTCGCAACGAAGTGGGCACGTTGGCTGCTAGCCTGAAACACATGCAATCTGAATTGGTCACTATCGT
CGGCGAGGTGCGTGTAGGCGCTGATGCTATCTACAGCGGTGCGTCAGAAATTGCGGTGGGTAACAATGATTTATCCGCCC
GTACTGAACAGCAAGCGGCATCATTGGAAGAAACGGCTGCCAGCATGGAGCAATTAACCGCAACGGTGAAACAGAACGCT
GAAAACGCCCGTCAGGCGAGTCAATTAGCATTGAGTGCCTCAGAAACCGCTCAGAAAGGGGGGAAAGTGGTGGCGGATGT
TGTGCAAACCATGCACGAGATCGCGGGGAGTTCGCAGAAGATTGCCGACATTACCAGCGTCATCGACGGTATCGCCTTCC
AGACCAATATCTTGGCATTGAATGCCGCCGTTGAAGCCGCCCGTGCAGGTGAGCAAGGCCGTGGTTTTGCCGTGGTTGCC
GGTGAAGTGCGCAATTTAGCACAACGCAGTGCACAGGCGGCGAAGGAAATTAAAGGTCTGATTGACGATTCGGTTAACCG
GGTAGATCTGGGCTCAGTACTGGTTGAAAGTGCCGGTGAAACCATGGGCGATATCGTTAATGCCGTGACCCGCGTGACCG
ACATCATGGGCGAAATCGCTTCTGCCTCAGATGAACAAAGTCGTGGTATTGACCAGATTGGTCAGGCAGTTGCCGAAATG
GACCGCGTGACACAGCAAAATGCTTCCTTGGTAGAAGAATCGGCTTCCGCCGCCGCTTCACTGGAAGAGCAAGCCAGCAT
GTTAACTCAAGCGATGTCCGTATTTGTTCTGAGTGTGGATAACAGTAATTCCACTAGCGACGTCAGAAAAGTCAAACAAC
CCACGCAGGAAATGAACAGCACGGCTAAAAAAGCGCTGGGAAATAATCTGCAAGACAATTGGGAAACTTTCTAG

Upstream 100 bases:

>100_bases
CCCACGGTAAAGTTCCCCTTTTTAGTGCCGATAACACACTTAATTAAACGTCTTTGTGTTTTGACGTGTCTGTGTTTTGT
CGTACTGATGAAGGGTTAAT

Downstream 100 bases:

>100_bases
ACCTATAACCTTCGAGCTTGACGCTGTTGACGTGTTAGCTGCGCGCACTCATCCGAATCACAAACTTGAGTCAGCACATC
GGGATCCGCCTGCTGGCCAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MFKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTRNTLNRAGVRYMMDINH
TGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELINLMETNKINEFFNHPTTSFQ
NEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQN
IEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNA
ENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA
GEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEM
DRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDVRKVKQPTQEMNSTAKKALGNNLQDNWETF

Sequences:

>Translated_557_residues
MFKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTRNTLNRAGVRYMMDINH
TGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELINLMETNKINEFFNHPTTSFQ
NEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQN
IEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNA
ENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA
GEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEM
DRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDVRKVKQPTQEMNSTAKKALGNNLQDNWETF
>Mature_557_residues
MFKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTRNTLNRAGVRYMMDINH
TGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELINLMETNKINEFFNHPTTSFQ
NEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQN
IEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNA
ENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA
GEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEM
DRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDVRKVKQPTQEMNSTAKKALGNNLQDNWETF

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=557, Percent_Identity=67.1454219030521, Blast_Score=697, Evalue=0.0,
Organism=Escherichia coli, GI1788195, Length=561, Percent_Identity=57.0409982174688, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1788194, Length=519, Percent_Identity=47.7842003853565, Blast_Score=448, Evalue=1e-127,
Organism=Escherichia coli, GI1787690, Length=507, Percent_Identity=46.7455621301775, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI1789453, Length=325, Percent_Identity=40.3076923076923, Blast_Score=224, Evalue=1e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 60500; Mature: 60500

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50885 HAMP ; PS00538 CHEMOTAXIS_TRANSDUC_1 ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYL
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LQTRNTLNRAGVRYMMDINHTGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPE
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCH
GAKKLKQSYEEYFSALTELINLMETNKINEFFNHPTTSFQNEFEQNYNNYLTQNDGLYDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHH
AVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQN
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
IEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAA
CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEECCCCCHHHHHHHHH
SLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
IADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
IDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEM
HHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH
DRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDVRKVKQPTQEMNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHH
TAKKALGNNLQDNWETF
HHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]