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The map label for this gene is lrpC [H]

Identifier: 218928786

GI number: 218928786

Start: 1876877

End: 1877326

Strand: Reverse

Name: lrpC [H]

Synonym: YPO1651

Alternate gene names: 218928786

Gene position: 1877326-1876877 (Counterclockwise)

Preceding gene: 218928787

Following gene: 218928785

Centisome position: 40.34

GC content: 44.0

Gene sequence:

>450_bases
ATGGACAAAATTGACGAACAATTGATTGCCATTTTAGTCGAAAATGCACGGACCTCCCTGAAAGACCTGTCCCAGAAAGT
CAACTTATCTTCCCCGAGCACCTCTGAACGTCTACGGCGTCTCGAAGAGCAGAATATCATTCTTAACTACACATTAGGTT
TGGACCAAAAAGCCTTTGGTTATAACTTACAAGCTATTGTCCGCGTCAAACCTGTCGCCAACATGCTGGATGCTGTTGAG
AAAATGATCAAGGACACGCCAGAGTGCATAGAGTGTGACAAAATAACCGGTGATGACTGTTTTTTGAGCCGTTTATCCAT
TCGGTCAATGGGACAACTGGATACCATTGTTGATCGCTGGTCAGAGCAAGCAGAAACCTATACCTCGATAGTCAAAACCA
CCCCGATTACACGGCGATTTCCACCATTAGTTCGACCGATAAAAATATAA

Upstream 100 bases:

>100_bases
TTTATCAATTAGAGATATAAAAAATGTTAGGTGGCTATCGGTAATAACTTTAAACCTACCTATAATCCATTGATACATCT
AAGAATAAGAGGCAGTAACT

Downstream 100 bases:

>100_bases
AAAGCGGAAGTGAGCATCTCAAGCCTCACGTTACCTATAATAAAGGGTTATTATTGACAGAATTATATTGATATTTAGGA
GCAGATCTTTGATGTGTATT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MDKIDEQLIAILVENARTSLKDLSQKVNLSSPSTSERLRRLEEQNIILNYTLGLDQKAFGYNLQAIVRVKPVANMLDAVE
KMIKDTPECIECDKITGDDCFLSRLSIRSMGQLDTIVDRWSEQAETYTSIVKTTPITRRFPPLVRPIKI

Sequences:

>Translated_149_residues
MDKIDEQLIAILVENARTSLKDLSQKVNLSSPSTSERLRRLEEQNIILNYTLGLDQKAFGYNLQAIVRVKPVANMLDAVE
KMIKDTPECIECDKITGDDCFLSRLSIRSMGQLDTIVDRWSEQAETYTSIVKTTPITRRFPPLVRPIKI
>Mature_149_residues
MDKIDEQLIAILVENARTSLKDLSQKVNLSSPSTSERLRRLEEQNIILNYTLGLDQKAFGYNLQAIVRVKPVANMLDAVE
KMIKDTPECIECDKITGDDCFLSRLSIRSMGQLDTIVDRWSEQAETYTSIVKTTPITRRFPPLVRPIKI

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16984; Mature: 16984

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIDEQLIAILVENARTSLKDLSQKVNLSSPSTSERLRRLEEQNIILNYTLGLDQKAFG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCC
YNLQAIVRVKPVANMLDAVEKMIKDTPECIECDKITGDDCFLSRLSIRSMGQLDTIVDRW
CCHHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHH
SEQAETYTSIVKTTPITRRFPPLVRPIKI
HHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDKIDEQLIAILVENARTSLKDLSQKVNLSSPSTSERLRRLEEQNIILNYTLGLDQKAFG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCC
YNLQAIVRVKPVANMLDAVEKMIKDTPECIECDKITGDDCFLSRLSIRSMGQLDTIVDRW
CCHHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHH
SEQAETYTSIVKTTPITRRFPPLVRPIKI
HHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]