Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 218928285

GI number: 218928285

Start: 1263985

End: 1265553

Strand: Direct

Name: cydA [H]

Synonym: YPO1117

Alternate gene names: 218928285

Gene position: 1263985-1265553 (Clockwise)

Preceding gene: 218928284

Following gene: 218928286

Centisome position: 27.16

GC content: 47.48

Gene sequence:

>1569_bases
ATGTTTGATATTGTCGAACTGTCACGGTTACAGTTTGCCTTAACGGCAATGTACCATTTCCTTTTTGTCCCATTAACGCT
CGGTCTGGCGTTTCTGTTGGCAATTATGGAATCGGTTTATGTGCTGTCTGGTAAACAAATCTATAAAGATATGACCAAAT
TCTGGGGTAAGTTATTTGCTATTAACTTTGCTCTGGGGGTTGCCACTGGTTTAACTATGGAGTTCCAGTTTGGGACTAAC
TGGTCATATTTCTCTCATTACGTCGGTGATATCTTCGGGGCCCCTCTGGCTATCGAAGGTTTAATGGCGTTCTTCCTGGA
ATCTACGTTTGTCGGTCTATTCTTCTTCGGATGGGATCGTCTGACTAAGCATCAGCATTTAGCTGTAACTTGGCTAGTTG
CGTTAGGTTCTAACTTCTCTGCATTGTGGATCTTGGTTGCGAATGGTTGGATGCAAAACCCGATTGCATCTGATTTCAAC
TTTGAAACCATGCGTATGGAAATGCTGAGCTTCTCAGAATTAGTTCTGAACCCGGTTGCTCAGGTGAAATTCGTTCATAC
CGTCGCTGCAGGTTATGTTACCGGCGCGATGTTTATCTTGGGTATCAGTTCTTACTATCTGTTGAAAGGACGTGATATTC
CCTTTGCCAAGCGTTCTTTTGCGATTGCTGCAAGTTTTGGTCTGGCCTCCGTATTGTCTGTTATCGTCCTGGGTGATGAG
TCCGGTTACGAAATGGGTGACGTACAGAAAACCAAGTTAGCCGCAATTGAAGCTGAATGGGAAACTCAGCCGCCTCCAGC
AGCCTTTACGCTGTTTGCGATCCCTAACCAGGAAACCATGGAGAACCGGTTCGCCATTCAGATTCCATATGCATTAGGAT
TGATCGCGACCCGTTCACTGGATACCCCGGTTATCGGTTTGCGTGACTTGATGTCGCAACATGAAGTGCGTATTCGTAAC
GGTATCCAGGCGTATAGTTTGTTAGAACAGTTACGTGGTGGTAACACTGACCCTGCTGTACGTGATGCATTCAATAAAGC
GAAGCAGGATCTTGGTTACGGCATGTTGCTTAAGCGTTATACGGAAAACGTAGCTGATGCGACTGAAGAACAAATTCAGT
TAGCTGCTCAAGACTCTATTCCGCGCGTACTGCCGCTTTATTTCGCCTTCCGCATCATGGTGGCCTGTGGCTTCCTGATG
TTGCTGATTATTGGGCTGGCGTTCTATAACGTGGTTCGTGGCCGGATTGGTGAGAAAAAATGGCTTCTGCGTGCCGCATT
GTATGGTATTCCGTTGCCGTGGATTGCCGTAGAAGCAGGCTGGTTTGTGGCCGAGTATGGCCGTCAACCTTGGGCCATCG
GTGAAGTATTGCCGACAGCAGTCGCCAACTCATCAGTCACTGCCGGGGAAATACTGTTCTCGATGGCGTTGATTTGCGGT
TTGTATACGCTGTTCCTGATTGCAGAAATGTACCTGATGTTCAAATTTGCGCGCCTTGGGCCTAGCAGCCTGAAAACTGG
CCGCTATCATTTTGAACAGCCGACTGCCCCAGTGCAGGAAGCACGGTAA

Upstream 100 bases:

>100_bases
TTTTTTTGAGCATTCACTGCTGGTAGTTATGAGGCTTCCGATTTAGCGGAGGTCCGGTTGCCGCAAGTCGGAATCTTCCT
GCGAGGAGCAAGGAGTCAAG

Downstream 100 bases:

>100_bases
ACAGGAGTCCACTTATGTTTGATTATGAAGTATTACGATTTATCTGGTGGCTGCTGATCGGTGTGCTGCTGATTGGTTTC
GCAGTCACCGATGGTTTCGA

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESVYVLSGKQIYKDMTKFWGKLFAINFALGVATGLTMEFQFGTN
WSYFSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLTKHQHLAVTWLVALGSNFSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVAAGYVTGAMFILGISSYYLLKGRDIPFAKRSFAIAASFGLASVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWETQPPPAAFTLFAIPNQETMENRFAIQIPYALGLIATRSLDTPVIGLRDLMSQHEVRIRN
GIQAYSLLEQLRGGNTDPAVRDAFNKAKQDLGYGMLLKRYTENVADATEEQIQLAAQDSIPRVLPLYFAFRIMVACGFLM
LLIIGLAFYNVVRGRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSVTAGEILFSMALICG
LYTLFLIAEMYLMFKFARLGPSSLKTGRYHFEQPTAPVQEAR

Sequences:

>Translated_522_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESVYVLSGKQIYKDMTKFWGKLFAINFALGVATGLTMEFQFGTN
WSYFSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLTKHQHLAVTWLVALGSNFSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVAAGYVTGAMFILGISSYYLLKGRDIPFAKRSFAIAASFGLASVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWETQPPPAAFTLFAIPNQETMENRFAIQIPYALGLIATRSLDTPVIGLRDLMSQHEVRIRN
GIQAYSLLEQLRGGNTDPAVRDAFNKAKQDLGYGMLLKRYTENVADATEEQIQLAAQDSIPRVLPLYFAFRIMVACGFLM
LLIIGLAFYNVVRGRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSVTAGEILFSMALICG
LYTLFLIAEMYLMFKFARLGPSSLKTGRYHFEQPTAPVQEAR
>Mature_522_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESVYVLSGKQIYKDMTKFWGKLFAINFALGVATGLTMEFQFGTN
WSYFSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLTKHQHLAVTWLVALGSNFSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVAAGYVTGAMFILGISSYYLLKGRDIPFAKRSFAIAASFGLASVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWETQPPPAAFTLFAIPNQETMENRFAIQIPYALGLIATRSLDTPVIGLRDLMSQHEVRIRN
GIQAYSLLEQLRGGNTDPAVRDAFNKAKQDLGYGMLLKRYTENVADATEEQIQLAAQDSIPRVLPLYFAFRIMVACGFLM
LLIIGLAFYNVVRGRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSVTAGEILFSMALICG
LYTLFLIAEMYLMFKFARLGPSSLKTGRYHFEQPTAPVQEAR

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=522, Percent_Identity=86.5900383141762, Blast_Score=940, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=515, Percent_Identity=60.9708737864078, Blast_Score=652, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58270; Mature: 58270

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESVYVLSGKQIYKDMTKFWGKLFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSYFSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR
HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTKHQHLAVTWLVALGSNFSALWILVANGWMQNPIASDFNFETMRMEMLSFSELVLNPVA
HCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVAAGYVTGAMFILGISSYYLLKGRDIPFAKRSFAIAASFGLASVLSVIVLGDE
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCC
SGYEMGDVQKTKLAAIEAEWETQPPPAAFTLFAIPNQETMENRFAIQIPYALGLIATRSL
CCCCCCCCCHHHHEEEEECCCCCCCCCEEEEEECCCCHHHCCCEEEEECHHHHHHHHCCC
DTPVIGLRDLMSQHEVRIRNGIQAYSLLEQLRGGNTDPAVRDAFNKAKQDLGYGMLLKRY
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
TENVADATEEQIQLAAQDSIPRVLPLYFAFRIMVACGFLMLLIIGLAFYNVVRGRIGEKK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
WLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSVTAGEILFSMALICG
HHHHHHHHCCCCCHHEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LYTLFLIAEMYLMFKFARLGPSSLKTGRYHFEQPTAPVQEAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MFDIVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESVYVLSGKQIYKDMTKFWGKLFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSYFSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR
HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTKHQHLAVTWLVALGSNFSALWILVANGWMQNPIASDFNFETMRMEMLSFSELVLNPVA
HCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVAAGYVTGAMFILGISSYYLLKGRDIPFAKRSFAIAASFGLASVLSVIVLGDE
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCC
SGYEMGDVQKTKLAAIEAEWETQPPPAAFTLFAIPNQETMENRFAIQIPYALGLIATRSL
CCCCCCCCCHHHHEEEEECCCCCCCCCEEEEEECCCCHHHCCCEEEEECHHHHHHHHCCC
DTPVIGLRDLMSQHEVRIRNGIQAYSLLEQLRGGNTDPAVRDAFNKAKQDLGYGMLLKRY
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
TENVADATEEQIQLAAQDSIPRVLPLYFAFRIMVACGFLMLLIIGLAFYNVVRGRIGEKK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
WLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSVTAGEILFSMALICG
HHHHHHHHCCCCCHHEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LYTLFLIAEMYLMFKFARLGPSSLKTGRYHFEQPTAPVQEAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]