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The map label for this gene is yafD [C]

Identifier: 218928246

GI number: 218928246

Start: 1224840

End: 1225622

Strand: Direct

Name: yafD [C]

Synonym: YPO1077

Alternate gene names: 218928246

Gene position: 1224840-1225622 (Clockwise)

Preceding gene: 218928245

Following gene: 218928249

Centisome position: 26.32

GC content: 49.04

Gene sequence:

>783_bases
GTGCCGAAAAGAACATATGCAATGCGGTATGTTGCAGGACAACCGGTTGAACAGATCTTCCCTGGCGCCGCTAAGCAACT
CGATAAAGGCTTGCCGTTAGGCGAACCATTACCTACAGCTGAACTTTTACGAGTGGTAGTGTGGAATATCTTTAAGCAGC
AGCGGGCTGGATGGCTACCTGTACTTAAGGAACTCGGGCGTGATACTCAACTGATGTTACTGCAAGAAGCACAAACTACA
CCTGAGTTGGTGAGGTTTGCGACTGCCAGCTATCAGGCCGCAGATCAGGTACCTGCTTTTTCATTGCCCCAGCACCCTTC
TGGTGTGATGACGCTGGCTGCGGCTCATCCAGTATATTGTTGCCCTTTGCGTGAGCGTGAGCCGCTACTGCGCTTGTCTA
AATCGGCTTTAGTTACTGTCTATCCTATTCATGATGGTCGCTTGTTAATGGTGGTGAATATTCATGCGGTAAACTTCAGT
CTTGGTGTCGATGTTTACAGCAAACAGCTCGATCCGATTGGTGATCAAATTGCTTCACATCGTGGCCCAGTTATTCTTGC
GGGTGATTTTAATGCCTGGAGCCGCCAACGTATTAATGCCTTGCAGCACTTTGCACAGGACGCTGGTTTACAAGAGGTTG
AATTTCGCGTCGATCACCGCAGTCGTGCGTTCGGCCGGCCTCTGGACTTTATTTTTTATCGCGGCCTTACCGTTATTGAT
GCTTCAGTTTTAGTGACCAGAGCCTCCGATCACAACCCACTCATTGTCGAATTCCAACCATAA

Upstream 100 bases:

>100_bases
GATATTACTGGCCGGGATATCTGGGAGTATAATCAATAGAATCCCGGCTGCTATTAACTATTGAGCCAGTGTGATTTTAG
ATAAGGAATAGGCGATAAGC

Downstream 100 bases:

>100_bases
AAAAGCACCTCGAAAGGTGCTTTTTGACAGTGATTCTGGCTCTACGCCTCCGGGGTTGATTTGTCGTTAACGAATAACGT
CAATTTCAAGCCTGGTTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPKRTYAMRYVAGQPVEQIFPGAAKQLDKGLPLGEPLPTAELLRVVVWNIFKQQRAGWLPVLKELGRDTQLMLLQEAQTT
PELVRFATASYQAADQVPAFSLPQHPSGVMTLAAAHPVYCCPLREREPLLRLSKSALVTVYPIHDGRLLMVVNIHAVNFS
LGVDVYSKQLDPIGDQIASHRGPVILAGDFNAWSRQRINALQHFAQDAGLQEVEFRVDHRSRAFGRPLDFIFYRGLTVID
ASVLVTRASDHNPLIVEFQP

Sequences:

>Translated_260_residues
MPKRTYAMRYVAGQPVEQIFPGAAKQLDKGLPLGEPLPTAELLRVVVWNIFKQQRAGWLPVLKELGRDTQLMLLQEAQTT
PELVRFATASYQAADQVPAFSLPQHPSGVMTLAAAHPVYCCPLREREPLLRLSKSALVTVYPIHDGRLLMVVNIHAVNFS
LGVDVYSKQLDPIGDQIASHRGPVILAGDFNAWSRQRINALQHFAQDAGLQEVEFRVDHRSRAFGRPLDFIFYRGLTVID
ASVLVTRASDHNPLIVEFQP
>Mature_259_residues
PKRTYAMRYVAGQPVEQIFPGAAKQLDKGLPLGEPLPTAELLRVVVWNIFKQQRAGWLPVLKELGRDTQLMLLQEAQTTP
ELVRFATASYQAADQVPAFSLPQHPSGVMTLAAAHPVYCCPLREREPLLRLSKSALVTVYPIHDGRLLMVVNIHAVNFSL
GVDVYSKQLDPIGDQIASHRGPVILAGDFNAWSRQRINALQHFAQDAGLQEVEFRVDHRSRAFGRPLDFIFYRGLTVIDA
SVLVTRASDHNPLIVEFQP

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family

Homologues:

Organism=Escherichia coli, GI1786403, Length=261, Percent_Identity=75.095785440613, Blast_Score=404, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1050_YERP3 (A7FFK3)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001400031.1
- ProteinModelPortal:   A7FFK3
- STRING:   A7FFK3
- GeneID:   5387912
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_1050
- eggNOG:   COG3021
- HOGENOM:   HBG349241
- OMA:   TDASDHN
- ProtClustDB:   PRK05421
- BioCyc:   YPSE349747:YPSIP31758_1050-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01119
- InterPro:   IPR005135
- InterPro:   IPR022958

Pfam domain/function: PF03372 Exo_endo_phos; SSF56219 Exo_endo_phos

EC number: NA

Molecular weight: Translated: 29051; Mature: 28920

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRTYAMRYVAGQPVEQIFPGAAKQLDKGLPLGEPLPTAELLRVVVWNIFKQQRAGWLP
CCCCCEEEEECCCCCHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
VLKELGRDTQLMLLQEAQTTPELVRFATASYQAADQVPAFSLPQHPSGVMTLAAAHPVYC
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEE
CPLREREPLLRLSKSALVTVYPIHDGRLLMVVNIHAVNFSLGVDVYSKQLDPIGDQIASH
CCCCCCCHHHHCCCCCEEEEEEECCCCEEEEEEEEEEEEEECCHHHHHHCCHHHHHHHHC
RGPVILAGDFNAWSRQRINALQHFAQDAGLQEVEFRVDHRSRAFGRPLDFIFYRGLTVID
CCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCHHHHHHCCHHHEE
ASVLVTRASDHNPLIVEFQP
HEEEEEECCCCCCEEEEECC
>Mature Secondary Structure 
PKRTYAMRYVAGQPVEQIFPGAAKQLDKGLPLGEPLPTAELLRVVVWNIFKQQRAGWLP
CCCCEEEEECCCCCHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
VLKELGRDTQLMLLQEAQTTPELVRFATASYQAADQVPAFSLPQHPSGVMTLAAAHPVYC
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEE
CPLREREPLLRLSKSALVTVYPIHDGRLLMVVNIHAVNFSLGVDVYSKQLDPIGDQIASH
CCCCCCCHHHHCCCCCEEEEEEECCCCEEEEEEEEEEEEEECCHHHHHHCCHHHHHHHHC
RGPVILAGDFNAWSRQRINALQHFAQDAGLQEVEFRVDHRSRAFGRPLDFIFYRGLTVID
CCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCHHHHHHCCHHHEE
ASVLVTRASDHNPLIVEFQP
HEEEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA