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The map label for this gene is ygdK [H]

Identifier: 218928195

GI number: 218928195

Start: 1167480

End: 1167923

Strand: Reverse

Name: ygdK [H]

Synonym: YPO1027

Alternate gene names: 218928195

Gene position: 1167923-1167480 (Counterclockwise)

Preceding gene: 218928196

Following gene: 218928191

Centisome position: 25.1

GC content: 52.25

Gene sequence:

>444_bases
ATGATGATTGCCCCACACCCATTTGGTCATGATATTACGGCTACTGACCTGATCGAGAAATTCAGTGCTCACAAACAGTG
GGAGGATCGCTACCGTCAGTTAATTCTGCTGGCCAAGCAACTCCCACCGTTGCAGGAGGCATGGAAAAAAAATGAACTGG
AATTGACGGGTTGTGAAAACAGAGTCTGGCTCGGGCACCAACATTTGCCAGATGGCACTTTGCATTTCTATGGCGACAGT
GAAGGCCGCATAGTACGCGGGCTGCTAGCGGTGATTCTAACCGCCGTGGAGGGTAAAACACCACAACAGGTGCTGGCCGC
AGACCCCTTGGCCCTGTTTGAGCAACTGGGGCTGCGCCAACAACTCAGCACCTCGCGTGCTAATGGATTACAAGCACTGG
CTCAAGGTGTACAAACCATCGCGGCCAAATACGCAGAACGATAA

Upstream 100 bases:

>100_bases
TGATTCCAGTTGCAAGAGAGCAGCAATCAAGTGAACGAAAGCCATCAACACAAGCCAGCTTGAAGAATGGCGGGTATCAA
TATACAAACAAGATGAGAAT

Downstream 100 bases:

>100_bases
TTATTCAGAACAATAAGTTGCAGAGTAACAATCGATTATGACGCAGTGGCGGCTGACTCGTGCTGACGGGCCGCTTTAGC
CATCATCTTCTTCAATACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MMIAPHPFGHDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENRVWLGHQHLPDGTLHFYGDS
EGRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQLSTSRANGLQALAQGVQTIAAKYAER

Sequences:

>Translated_147_residues
MMIAPHPFGHDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENRVWLGHQHLPDGTLHFYGDS
EGRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQLSTSRANGLQALAQGVQTIAAKYAER
>Mature_147_residues
MMIAPHPFGHDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENRVWLGHQHLPDGTLHFYGDS
EGRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQLSTSRANGLQALAQGVQTIAAKYAER

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=135, Percent_Identity=58.5185185185185, Blast_Score=166, Evalue=7e-43,
Organism=Escherichia coli, GI1787969, Length=117, Percent_Identity=32.4786324786325, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 16458; Mature: 16458

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIAPHPFGHDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCEN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCC
RVWLGHQHLPDGTLHFYGDSEGRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQ
CEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCHHH
QLSTSRANGLQALAQGVQTIAAKYAER
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMIAPHPFGHDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCEN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCC
RVWLGHQHLPDGTLHFYGDSEGRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQ
CEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCHHH
QLSTSRANGLQALAQGVQTIAAKYAER
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]