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The map label for this gene is yciR [C]

Identifier: 218928168

GI number: 218928168

Start: 1109070

End: 1111436

Strand: Reverse

Name: yciR [C]

Synonym: YPO0998

Alternate gene names: 218928168

Gene position: 1111436-1109070 (Counterclockwise)

Preceding gene: 218928169

Following gene: 218928165

Centisome position: 23.88

GC content: 48.29

Gene sequence:

>2367_bases
ATGCAGCAGGACTCACTCAAAACCAGAATAAAAGATAATGCATTTTGGGGTGATGCTTACCAGCACCTGCATGTAAAAAT
GGATACCGACTGGGCCTTTATTAGCCAAAATATGGGGCCTTCCCTGTATAAAGATTTTAGTCTTGAAGGTGTCTTTGTCA
TTGATGGGCAGGGAAAGACCCGTTATTCAGTGATCAATGGGCAATTAGTCAATACCGACCTACAGAGTTGGCTGCATAAA
GATATTACGCCACTAATCGATATCGCACGTCAGCGGGCTGAAAAACCATATATTGCTGTCGATACTCTCGAAATAGCGGG
TCAGCCAGCATTAATTGCCGCCGCCGCATTAACCCCCGGAGAGGATCCGCGTGTCCAATGGGTTGCTGGCCCCCCTTCCG
TGTTGGTATTTATCAATATCCTGACACCGGCTGAACTGAGCGCATTGGGGGAGAATTATGGTATCCACAACCTGCGTATG
CCGAGAAATAGCCAGGATGCCACATCCAAACCTTCGCTGGTCATCGCCTCATCAGATAACAGTACCCTGACCTTACATTG
GGATCAGGAGATGCCAGGAACCCCATTATTAAATATCTTGCTACCGTTACTGGCGTTGGTTGCCCTAATTATTGGGTTAA
CCGCCTGGCTGGTTATACGCCGCGCCATCTCGGAGGCGCAAGCCACCGATAGGAGCCGGGCCGCGTTGGCTGCCAGCGAA
GAACGTTTCCGCCATGTGGCAGAATCGGCCAGTGATTGGTTATGGGAGACCGACGCAGAGTTACAGGTGACTTATCTCTC
ACCACGCTTCTTAATCATCAGCGGATGGAGTGTTGATCACTGGCTGGGGCTTAATCTTGATTCACTGTTAAATTGTGACA
TTACTTCGCTACGGACTTGGTTGCAGCACACCCATTTAACTGATTCACGTAACGAACTGCAATGCACTTATTTCTCAGCT
AAAGGTAGCAAACGGGTCTGCCGAATCCATGCCAAGCCGATCATTCAGCAGGGTGAAATCGTCGGTTTTCGTGGTACCGC
CTCAGATCTTACGCGTGAAATCGAAGCTGAGAAACGTATTGAGCACCTTTCCCTACATGATGCGCTAACCGGTTTACCTA
ACCGGACGTTGATGACCGAGTTCTTGGAAAATAAGCTGCACAATCTGGCCGCCGTAGAGCATCCCTTGGTGATCCTTAAT
GTTAATTTGGATAAGTTCAAGCCCGTCAATGACATCTTTGGTCATGTCACTGGCGATCAAGTGCTTTATCAGGTTGCTGA
GCGCCTGCGCTCCTGCTTGCGTGACAAGGATTTAGTCTCCCGCCAAGGCGGAGATGAGTTTGTTTTGATTATTTCCAATC
TCTCCTCTTCCTACGAGATCGAACTGTTATGCGCCAGGGTGATCACCCGTCTCCAAACACCGTACGTGATCAATGATCAA
GAGATTTATCTTGGGGCCAGTATTGGTATTACGTTAGCACCACAAGACTCAATGCAAGCGGAAGAATTGCTGCGATTCGC
CGATATCGCGATGTGTGAAGCCAAAAATAGTCCTCGTAACCGGTGGCGTTTTTACGCCAGTGAAATGAATGACCGCCTGA
TGCAACGAATTGAACTTGAAAAGTTTTTACGTTTAGCCGTTAAAAAAAGCGAATTCTGTCTTTACTATCAACCTCGCTAC
CGTACTGACGACATGCAACTGATAGGGGCAGAGGCGTTGGTACGCTGGAATCACCCGGTTCTGGGGTTGCTGATGCCAGA
TCAATTTATTGCGTTAGCGGAGGAGACCGGGCTTATCACTGCCATCAGCGATTGGACCCTCTTACAAGCCTGCCAAGACG
CGATGACCTGGCCAACCTCATTGATTGTCTCGGTAAATATCTCGGCGATTGAATTCAGGGGCCAATGTCTTATCGAGCGA
GTCCGGCAAGCCCTCTTAGTGACAGGTTTGCCCAGCCATCGGCTCGAGTTGGAGATCACCGAGAGGATCATGATTGAAGA
TGCTGATGGCGCACTGAAGATCATGACTGCGCTAAAAACCTTGGGTATACGCCTGTCGATAGATGATTTTGGTACAGGAT
ATTCTTCACTGAATTATCTGCACCGTTTTCCTTTTGACGGGTTGAAAATTGATAAAAGTTTTATTGATAAACTCACCGAG
TCACATGAAGGGCAATCCATTGTCGAAGGTATTATTAACCTGGGCCATGCTATTTCAATGACCGTGATCGCCGAAGGCGT
GGAAACGGCCGAGCAACTCACCTATTTGCAGTCACTCCATTGTGATGAGGTGCAGGGGTATTTTCTTGCCAAACCTATGC
CGGTAGAGGCGTTGTCTTTGGTTTTTTCTGAGGATTTATCGGTGTGA

Upstream 100 bases:

>100_bases
GACGATCATTATTGCTGCTGTGGGTATTATTTATATCGCATCACAATTAAATGAACAGGCAAGTGTACAAAGCCGCTTCC
TGATCGAAAAAGCGTAGAAA

Downstream 100 bases:

>100_bases
TGGTGGGGGAGCGGGGGGATCGGTTCGGGGCTCGGTTTGGGGAGCGGGGTTGGTGATCAGGGGTGGTGCTCGGTTCGGTG
CTCGGTTCGGTGCTCGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MQQDSLKTRIKDNAFWGDAYQHLHVKMDTDWAFISQNMGPSLYKDFSLEGVFVIDGQGKTRYSVINGQLVNTDLQSWLHK
DITPLIDIARQRAEKPYIAVDTLEIAGQPALIAAAALTPGEDPRVQWVAGPPSVLVFINILTPAELSALGENYGIHNLRM
PRNSQDATSKPSLVIASSDNSTLTLHWDQEMPGTPLLNILLPLLALVALIIGLTAWLVIRRAISEAQATDRSRAALAASE
ERFRHVAESASDWLWETDAELQVTYLSPRFLIISGWSVDHWLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTYFSA
KGSKRVCRIHAKPIIQQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAAVEHPLVILN
VNLDKFKPVNDIFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFVLIISNLSSSYEIELLCARVITRLQTPYVINDQ
EIYLGASIGITLAPQDSMQAEELLRFADIAMCEAKNSPRNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRY
RTDDMQLIGAEALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWPTSLIVSVNISAIEFRGQCLIER
VRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRLSIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTE
SHEGQSIVEGIINLGHAISMTVIAEGVETAEQLTYLQSLHCDEVQGYFLAKPMPVEALSLVFSEDLSV

Sequences:

>Translated_788_residues
MQQDSLKTRIKDNAFWGDAYQHLHVKMDTDWAFISQNMGPSLYKDFSLEGVFVIDGQGKTRYSVINGQLVNTDLQSWLHK
DITPLIDIARQRAEKPYIAVDTLEIAGQPALIAAAALTPGEDPRVQWVAGPPSVLVFINILTPAELSALGENYGIHNLRM
PRNSQDATSKPSLVIASSDNSTLTLHWDQEMPGTPLLNILLPLLALVALIIGLTAWLVIRRAISEAQATDRSRAALAASE
ERFRHVAESASDWLWETDAELQVTYLSPRFLIISGWSVDHWLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTYFSA
KGSKRVCRIHAKPIIQQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAAVEHPLVILN
VNLDKFKPVNDIFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFVLIISNLSSSYEIELLCARVITRLQTPYVINDQ
EIYLGASIGITLAPQDSMQAEELLRFADIAMCEAKNSPRNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRY
RTDDMQLIGAEALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWPTSLIVSVNISAIEFRGQCLIER
VRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRLSIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTE
SHEGQSIVEGIINLGHAISMTVIAEGVETAEQLTYLQSLHCDEVQGYFLAKPMPVEALSLVFSEDLSV
>Mature_788_residues
MQQDSLKTRIKDNAFWGDAYQHLHVKMDTDWAFISQNMGPSLYKDFSLEGVFVIDGQGKTRYSVINGQLVNTDLQSWLHK
DITPLIDIARQRAEKPYIAVDTLEIAGQPALIAAAALTPGEDPRVQWVAGPPSVLVFINILTPAELSALGENYGIHNLRM
PRNSQDATSKPSLVIASSDNSTLTLHWDQEMPGTPLLNILLPLLALVALIIGLTAWLVIRRAISEAQATDRSRAALAASE
ERFRHVAESASDWLWETDAELQVTYLSPRFLIISGWSVDHWLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTYFSA
KGSKRVCRIHAKPIIQQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAAVEHPLVILN
VNLDKFKPVNDIFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFVLIISNLSSSYEIELLCARVITRLQTPYVINDQ
EIYLGASIGITLAPQDSMQAEELLRFADIAMCEAKNSPRNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRY
RTDDMQLIGAEALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWPTSLIVSVNISAIEFRGQCLIER
VRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRLSIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTE
SHEGQSIVEGIINLGHAISMTVIAEGVETAEQLTYLQSLHCDEVQGYFLAKPMPVEALSLVFSEDLSV

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=36.0091743119266, Blast_Score=294, Evalue=2e-80,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=34.1860465116279, Blast_Score=251, Evalue=9e-68,
Organism=Escherichia coli, GI226510982, Length=464, Percent_Identity=25, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=37.2384937238494, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=35.8024691358025, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=33.6, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=33.7448559670782, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081743, Length=250, Percent_Identity=31.2, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788381, Length=565, Percent_Identity=24.4247787610619, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=29.5719844357977, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI87081881, Length=221, Percent_Identity=33.0316742081448, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788849, Length=265, Percent_Identity=30.188679245283, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=37.2549019607843, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=33.1395348837209, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=27.0161290322581, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788956, Length=154, Percent_Identity=32.4675324675325, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=33.5403726708075, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=33.7423312883436, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=30.0578034682081, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082280, Length=236, Percent_Identity=28.8135593220339, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=127, Percent_Identity=33.0708661417323, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=115, Percent_Identity=33.9130434782609, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 88544; Mature: 88544

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDSLKTRIKDNAFWGDAYQHLHVKMDTDWAFISQNMGPSLYKDFSLEGVFVIDGQGKT
CCCCHHHHHHCCCCEECCCEEEEEEEECCCHHEEECCCCCHHHHCCCCCEEEEEECCCCE
RYSVINGQLVNTDLQSWLHKDITPLIDIARQRAEKPYIAVDTLEIAGQPALIAAAALTPG
EEEEECCEEECHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEHHHCCCCCEEEEEECCCC
EDPRVQWVAGPPSVLVFINILTPAELSALGENYGIHNLRMPRNSQDATSKPSLVIASSDN
CCCCEEEEECCCCEEEEEEECCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEECCC
STLTLHWDQEMPGTPLLNILLPLLALVALIIGLTAWLVIRRAISEAQATDRSRAALAASE
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ERFRHVAESASDWLWETDAELQVTYLSPRFLIISGWSVDHWLGLNLDSLLNCDITSLRTW
HHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEECCCCHHEECCCHHHHHCCCHHHHHHH
LQHTHLTDSRNELQCTYFSAKGSKRVCRIHAKPIIQQGEIVGFRGTASDLTREIEAEKRI
HHHHCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHH
EHLSLHDALTGLPNRTLMTEFLENKLHNLAAVEHPLVILNVNLDKFKPVNDIFGHVTGDQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCHHHHHCCCCHHH
VLYQVAERLRSCLRDKDLVSRQGGDEFVLIISNLSSSYEIELLCARVITRLQTPYVINDQ
HHHHHHHHHHHHHCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCC
EIYLGASIGITLAPQDSMQAEELLRFADIAMCEAKNSPRNRWRFYASEMNDRLMQRIELE
EEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KFLRLAVKKSEFCLYYQPRYRTDDMQLIGAEALVRWNHPVLGLLMPDQFIALAEETGLIT
HHHHHHHCCCCEEEEECCCCCCCCHHHCCHHHHEEECCCEEEEECCCHHHHHHHCCCEEE
AISDWTLLQACQDAMTWPTSLIVSVNISAIEFRGQCLIERVRQALLVTGLPSHRLELEIT
EECCHHHHHHHHHHHCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEEE
ERIMIEDADGALKIMTALKTLGIRLSIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTE
EEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCCEEECHHHHHHHHH
SHEGQSIVEGIINLGHAISMTVIAEGVETAEQLTYLQSLHCDEVQGYFLAKPMPVEALSL
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHH
VFSEDLSV
HHHHCCCC
>Mature Secondary Structure
MQQDSLKTRIKDNAFWGDAYQHLHVKMDTDWAFISQNMGPSLYKDFSLEGVFVIDGQGKT
CCCCHHHHHHCCCCEECCCEEEEEEEECCCHHEEECCCCCHHHHCCCCCEEEEEECCCCE
RYSVINGQLVNTDLQSWLHKDITPLIDIARQRAEKPYIAVDTLEIAGQPALIAAAALTPG
EEEEECCEEECHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEHHHCCCCCEEEEEECCCC
EDPRVQWVAGPPSVLVFINILTPAELSALGENYGIHNLRMPRNSQDATSKPSLVIASSDN
CCCCEEEEECCCCEEEEEEECCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEECCC
STLTLHWDQEMPGTPLLNILLPLLALVALIIGLTAWLVIRRAISEAQATDRSRAALAASE
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ERFRHVAESASDWLWETDAELQVTYLSPRFLIISGWSVDHWLGLNLDSLLNCDITSLRTW
HHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEECCCCHHEECCCHHHHHCCCHHHHHHH
LQHTHLTDSRNELQCTYFSAKGSKRVCRIHAKPIIQQGEIVGFRGTASDLTREIEAEKRI
HHHHCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHH
EHLSLHDALTGLPNRTLMTEFLENKLHNLAAVEHPLVILNVNLDKFKPVNDIFGHVTGDQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCHHHHHCCCCHHH
VLYQVAERLRSCLRDKDLVSRQGGDEFVLIISNLSSSYEIELLCARVITRLQTPYVINDQ
HHHHHHHHHHHHHCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCC
EIYLGASIGITLAPQDSMQAEELLRFADIAMCEAKNSPRNRWRFYASEMNDRLMQRIELE
EEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KFLRLAVKKSEFCLYYQPRYRTDDMQLIGAEALVRWNHPVLGLLMPDQFIALAEETGLIT
HHHHHHHCCCCEEEEECCCCCCCCHHHCCHHHHEEECCCEEEEECCCHHHHHHHCCCEEE
AISDWTLLQACQDAMTWPTSLIVSVNISAIEFRGQCLIERVRQALLVTGLPSHRLELEIT
EECCHHHHHHHHHHHCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEEE
ERIMIEDADGALKIMTALKTLGIRLSIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTE
EEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCCEEECHHHHHHHHH
SHEGQSIVEGIINLGHAISMTVIAEGVETAEQLTYLQSLHCDEVQGYFLAKPMPVEALSL
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHH
VFSEDLSV
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]