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The map label for this gene is rbsC [H]

Identifier: 218928128

GI number: 218928128

Start: 1057019

End: 1058038

Strand: Reverse

Name: rbsC [H]

Synonym: YPO0957

Alternate gene names: 218928128

Gene position: 1058038-1057019 (Counterclockwise)

Preceding gene: 218928129

Following gene: 218928122

Centisome position: 22.74

GC content: 46.67

Gene sequence:

>1020_bases
ATGACATCAAGACAATATTACATAAAGGATAAGGTAATGGGATCCATAGTCAAAGAGGTTGATGACGTCAGGCAGGTGTC
ATTGATGAAGAGAACGGCGCTGTTCCTGCTAGACAACTCAACGACCGTTGTTTTTATTGTTATGTTGATTGCAGCAGGTT
TCTTCTCTGATCGATTTTACAGTGGGGATAATATTACCAATGTGTTGCGCCAAAGTGTTCCGCTCGGTCTGGCGGCATTG
GGGATGTTGTTCGTCATTCTGACTGGTGGTATTGATCTGTCCATTGGCTCCATTATGGCATTTGTCTCGGTCTTGGTAGG
GCTGTTGATCCCAGAATTTGGGTTATGGCCAGCGTTGATTGCGGGTGTCGGTATTGCCACTTTGATGGGGGCATTCTCCG
GTTTTTTGGTCACTTGGTTTAATATCGCGCCTTTTATTGCCACATTGGCGATGATGACCATTGCGCGAGGCGTGGCGCTG
ATTATTTCTAAGGGCCAACCGGTATTTATTGATAACGATGCTTTCGTAAACTTTGGTACGGGCTATTTCCTTGGGATCCC
TCTGCCTGTCTATGTTTTCCTCGGTTTTGCCATTATTTGCCAATTGGTATACAAAAATTCGGTCTTTGGTCGGTTGGTGG
TGTCGATAGGCTCTAACGAAACTGCGACTCGCTTCGCAGGTATTCGGGTCAATAACTATAAGTTAGCCGTTTATGCTATT
AGCGCATTTGCCTGTGGTGCGGCGGGTATCATTTCTGCCACCCGAACGGGGGTGGGATCACCGGTGCTGTCTATTGGATT
TGAACTGGATGTCATTGCGGCGGTAGTCGTTGGCGGGGCCAGTCTGGCGGGGGGCCATGGCAATGTGGTCAATACTATTA
TTGGCGTATTTATCCTGAGTATAATATCCAATCTAATGAATTTAATGAATATTTCCGGCTATAACCAACAGGTGGTCAAA
GGGGTTATCATCATCATCGCGGTGATGGTCCAAAGCCTAAAATCGCGGAGTAAAGCCTGA

Upstream 100 bases:

>100_bases
TTTATGTGATGAGTGAAGGGCGCATTACCAAAGAGCTGCAACACGATGAGATTTCAGAAGAAAATATCATGCGCTATGCC
ATTCCCAAGCGCGAGACAAT

Downstream 100 bases:

>100_bases
TTTTTGGGGCTAGGTCAGGACGTTGATCTAAACAGAGGGCAGCAGTAACATTACCCTCTTCAGTAACAATGCCCTCTGTT
TGTTAGAAATCGATACTGCC

Product: putative sugar transport system permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTSRQYYIKDKVMGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQSVPLGLAAL
GMLFVILTGGIDLSIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVAL
IISKGQPVFIDNDAFVNFGTGYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAI
SAFACGAAGIISATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNISGYNQQVVK
GVIIIIAVMVQSLKSRSKA

Sequences:

>Translated_339_residues
MTSRQYYIKDKVMGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQSVPLGLAAL
GMLFVILTGGIDLSIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVAL
IISKGQPVFIDNDAFVNFGTGYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAI
SAFACGAAGIISATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNISGYNQQVVK
GVIIIIAVMVQSLKSRSKA
>Mature_338_residues
TSRQYYIKDKVMGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFYSGDNITNVLRQSVPLGLAALG
MLFVILTGGIDLSIGSIMAFVSVLVGLLIPEFGLWPALIAGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVALI
ISKGQPVFIDNDAFVNFGTGYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAIS
AFACGAAGIISATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILSIISNLMNLMNISGYNQQVVKG
VIIIIAVMVQSLKSRSKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=36.8932038834951, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI145693152, Length=297, Percent_Identity=37.7104377104377, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1788896, Length=284, Percent_Identity=36.6197183098592, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=36.241610738255, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=30.9037900874636, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI87082395, Length=285, Percent_Identity=34.0350877192982, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI145693214, Length=237, Percent_Identity=33.7552742616034, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787793, Length=279, Percent_Identity=27.5985663082437, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=29.940119760479, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787794, Length=280, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35879; Mature: 35748

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRQYYIKDKVMGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCC
SGDNITNVLRQSVPLGLAALGMLFVILTGGIDLSIGSIMAFVSVLVGLLIPEFGLWPALI
CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
AGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVALIISKGQPVFIDNDAFVNFGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCCEEECCC
GYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAI
CEEECCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCHHHEEEEEECCEEEEEEEH
SAFACGAAGIISATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILS
HHHHCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
IISNLMNLMNISGYNQQVVKGVIIIIAVMVQSLKSRSKA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSRQYYIKDKVMGSIVKEVDDVRQVSLMKRTALFLLDNSTTVVFIVMLIAAGFFSDRFY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCC
SGDNITNVLRQSVPLGLAALGMLFVILTGGIDLSIGSIMAFVSVLVGLLIPEFGLWPALI
CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
AGVGIATLMGAFSGFLVTWFNIAPFIATLAMMTIARGVALIISKGQPVFIDNDAFVNFGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCCEEECCC
GYFLGIPLPVYVFLGFAIICQLVYKNSVFGRLVVSIGSNETATRFAGIRVNNYKLAVYAI
CEEECCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCHHHEEEEEECCEEEEEEEH
SAFACGAAGIISATRTGVGSPVLSIGFELDVIAAVVVGGASLAGGHGNVVNTIIGVFILS
HHHHCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
IISNLMNLMNISGYNQQVVKGVIIIIAVMVQSLKSRSKA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]