| Definition | Yersinia pestis CO92 chromosome, complete genome. |
|---|---|
| Accession | NC_003143 |
| Length | 4,653,728 |
Click here to switch to the map view.
The map label for this gene is 218928110
Identifier: 218928110
GI number: 218928110
Start: 1029436
End: 1030320
Strand: Direct
Name: 218928110
Synonym: YPO0938
Alternate gene names: NA
Gene position: 1029436-1030320 (Clockwise)
Preceding gene: 218928109
Following gene: 218928111
Centisome position: 22.12
GC content: 50.4
Gene sequence:
>885_bases ATGACAAAAGTGACTGTTGCTGCGACTCAAATGGCCTGTTCTTGGGACCTGCCGAAAAACATTGAAAATGCCGAAAAATT GGTACGACAGGCACATGCCAAAGGCGCACAGATCATCCTGATTCAGGAGCTGTTTGCCGCACCTTACTTCTGCATTGATC AAAGCCCAGAGCACTACGCACTGGCCCAAGAGCTGGATAATAGTCCATTAATTAAACACTTCTCCAAGCTTGCCGCTGAG TTGGAAGTGGTACTACCGCTGAGTTTCTTTGAGAAAGCCAATAATGCTTACTATAACTCGCTAGTCATGATTGACGCCGA TGGCTCGGTGCTGGACGTCTACCGTAAAACCCACATTCCTAATGGCCCGGCTTATCAGGAGAAACAGTTCTTTATCCCTG GCGATACCGGTTTTAAAGTTTGGCAAACCCGTTATGCCAAAGTGGGCGTAGGCATCTGTTGGGATCAGTGGTTCCCTGAA ACCGCGCGCAGCCTGGCACTGCTTGGGGCAGAAGTTATCTTCTACCCAACAGCAATCGGCTCAGAACCTGCTTACCCTGA AATTGACAGCCAACCGCACTGGACCCGTGTCCAGCAAGGCCATGCAGCCGCAAACCTGGTTCCAGTGATTGCCTCTAACC GCATCGGTACTGAGAAAAGTAAATACATTGATGGGCTGGAGATGACGTTCTACGGCTCCTCGTTTATTGCTGACCAAACT GGCGCACTGTTAGCTCAAGCTAACAAAACTGACGAAGCGGTTCTGGTGCATGAATTTGATTTGCAGGAGATCGCCGCCCA ACGTGCTTCATGGGGCTTGTTCCGTGATCGCCGCCCAGAGATGTACCAAACATTAGCCACGTCAGACGGCAAGACCCGGA GATAA
Upstream 100 bases:
>100_bases TGTATACTTATAACTTTGTATACTGCGGCGATGCCAATCAGCAGTTTAAAATATTGCACACCTCTTGCAGGTGTTTTTTT ACATTTATTGAGGTTTTCTC
Downstream 100 bases:
>100_bases TTTATGTCGGTGCAAGACACGATGTTACAACAACAGGCATTACCCGGCACACCGCGGCAGGATGGTTTCTTTATGCCTGC AGAATGGGCACCGCAGGATG
Product: putative carbon-nitrogen hydrolase
Products: NA
Alternate protein names: D-N-alpha-carbamilase [H]
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MTKVTVAATQMACSWDLPKNIENAEKLVRQAHAKGAQIILIQELFAAPYFCIDQSPEHYALAQELDNSPLIKHFSKLAAE LEVVLPLSFFEKANNAYYNSLVMIDADGSVLDVYRKTHIPNGPAYQEKQFFIPGDTGFKVWQTRYAKVGVGICWDQWFPE TARSLALLGAEVIFYPTAIGSEPAYPEIDSQPHWTRVQQGHAAANLVPVIASNRIGTEKSKYIDGLEMTFYGSSFIADQT GALLAQANKTDEAVLVHEFDLQEIAAQRASWGLFRDRRPEMYQTLATSDGKTRR
Sequences:
>Translated_294_residues MTKVTVAATQMACSWDLPKNIENAEKLVRQAHAKGAQIILIQELFAAPYFCIDQSPEHYALAQELDNSPLIKHFSKLAAE LEVVLPLSFFEKANNAYYNSLVMIDADGSVLDVYRKTHIPNGPAYQEKQFFIPGDTGFKVWQTRYAKVGVGICWDQWFPE TARSLALLGAEVIFYPTAIGSEPAYPEIDSQPHWTRVQQGHAAANLVPVIASNRIGTEKSKYIDGLEMTFYGSSFIADQT GALLAQANKTDEAVLVHEFDLQEIAAQRASWGLFRDRRPEMYQTLATSDGKTRR >Mature_293_residues TKVTVAATQMACSWDLPKNIENAEKLVRQAHAKGAQIILIQELFAAPYFCIDQSPEHYALAQELDNSPLIKHFSKLAAEL EVVLPLSFFEKANNAYYNSLVMIDADGSVLDVYRKTHIPNGPAYQEKQFFIPGDTGFKVWQTRYAKVGVGICWDQWFPET ARSLALLGAEVIFYPTAIGSEPAYPEIDSQPHWTRVQQGHAAANLVPVIASNRIGTEKSKYIDGLEMTFYGSSFIADQTG ALLAQANKTDEAVLVHEFDLQEIAAQRASWGLFRDRRPEMYQTLATSDGKTRR
Specific function: The enzyme catalyzes the hydrolysis of N-carbamoyl-D- amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
Organism=Homo sapiens, GI9910460, Length=290, Percent_Identity=28.6206896551724, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI5031947, Length=292, Percent_Identity=27.7397260273973, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI297632348, Length=292, Percent_Identity=27.7397260273973, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI297632350, Length=292, Percent_Identity=27.7397260273973, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI7706509, Length=270, Percent_Identity=27.4074074074074, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI297632346, Length=203, Percent_Identity=30.0492610837438, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17533173, Length=270, Percent_Identity=28.8888888888889, Blast_Score=120, Evalue=8e-28, Organism=Caenorhabditis elegans, GI17556280, Length=286, Percent_Identity=24.8251748251748, Blast_Score=79, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6323383, Length=291, Percent_Identity=26.8041237113402, Blast_Score=107, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6322335, Length=306, Percent_Identity=27.1241830065359, Blast_Score=91, Evalue=2e-19, Organism=Drosophila melanogaster, GI21358471, Length=270, Percent_Identity=28.5185185185185, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI21355835, Length=288, Percent_Identity=23.9583333333333, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17933642, Length=283, Percent_Identity=23.6749116607774, Blast_Score=72, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003010 [H]
Pfam domain/function: PF00795 CN_hydrolase [H]
EC number: =3.5.1.77 [H]
Molecular weight: Translated: 32881; Mature: 32749
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVTVAATQMACSWDLPKNIENAEKLVRQAHAKGAQIILIQELFAAPYFCIDQSPEHYA CCEEEEEEEHEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCEEEECCCCCHHH LAQELDNSPLIKHFSKLAAELEVVLPLSFFEKANNAYYNSLVMIDADGSVLDVYRKTHIP HHHHCCCCHHHHHHHHHHHHHHHEECHHHHHHCCCCEEEEEEEEECCCCEEEHHHHHCCC NGPAYQEKQFFIPGDTGFKVWQTRYAKVGVGICWDQWFPETARSLALLGAEVIFYPTAIG CCCCCCCCEEEECCCCCHHHHHHHHHHHCCEEEHHHCCHHHHHHHHHHCCEEEEEEECCC SEPAYPEIDSQPHWTRVQQGHAAANLVPVIASNRIGTEKSKYIDGLEMTFYGSSFIADQT CCCCCCCCCCCCCHHHHHCCCCHHHEEEEEECCCCCCCHHHHHCCEEEEEECCCHHCCCC GALLAQANKTDEAVLVHEFDLQEIAAQRASWGLFRDRRPEMYQTLATSDGKTRR CHHEEECCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure TKVTVAATQMACSWDLPKNIENAEKLVRQAHAKGAQIILIQELFAAPYFCIDQSPEHYA CEEEEEEEHEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCEEEECCCCCHHH LAQELDNSPLIKHFSKLAAELEVVLPLSFFEKANNAYYNSLVMIDADGSVLDVYRKTHIP HHHHCCCCHHHHHHHHHHHHHHHEECHHHHHHCCCCEEEEEEEEECCCCEEEHHHHHCCC NGPAYQEKQFFIPGDTGFKVWQTRYAKVGVGICWDQWFPETARSLALLGAEVIFYPTAIG CCCCCCCCEEEECCCCCHHHHHHHHHHHCCEEEHHHCCHHHHHHHHHHCCEEEEEEECCC SEPAYPEIDSQPHWTRVQQGHAAANLVPVIASNRIGTEKSKYIDGLEMTFYGSSFIADQT CCCCCCCCCCCCCHHHHHCCCCHHHEEEEEECCCCCCCHHHHHCCEEEEEECCCHHCCCC GALLAQANKTDEAVLVHEFDLQEIAAQRASWGLFRDRRPEMYQTLATSDGKTRR CHHEEECCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9648217; 10903946 [H]