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The map label for this gene is yqfA [H]

Identifier: 218928074

GI number: 218928074

Start: 985177

End: 985878

Strand: Reverse

Name: yqfA [H]

Synonym: YPO0900

Alternate gene names: 218928074

Gene position: 985878-985177 (Counterclockwise)

Preceding gene: 218928075

Following gene: 218928073

Centisome position: 21.18

GC content: 50.28

Gene sequence:

>702_bases
TTGAAGAATAAATCAGGGACACAACCTCTCTTTGCAACACCATCCGTACCCGCCGCACAAACGGCCACCCCAACCCCGGC
TTACCCGTGGGCTGAAGAGCTGGCGAACAGCCTCAGCCATGGTATCGGTGTGGTGTTCGGTATTGTGGGGCTGGTATTGC
TACTGGTTCAGGCGGTGAACAGTGGTGCCGATACCAAAGCGCTCACTAGCTATAGTTTGTACGGTAGCAGTATCATTTTG
TTGTTTTTGGCCTCTACGCTGTATCACGCCATTCCACATCGTAGGGCGAAGCTCTGGCTGCAAAAATTTGATCACTGCGC
TATCTACATCTTGATTGCCGGGACTTATACGCCGTTCTTATTAGTAGGGCTAGATTCGCCTCTGGCCAGAGGTTTGATGG
CGGTTATTTGGGGGCTGGCACTCATCGGTGTGATCTTTAAGTTGGCGTTTGCTCATCGTTTTGAAGTGTTGTCACTGGTG
ACCTATCTGACCATGGGGTGGTTATCGCTGATTGTCATTTATCAGCTCGCGGTCAAGCTTGAGATCGGGGGGTTGGCACT
GCTGGCGATAGGGGGCTTGTTATATACGGTTGGGGTGATCTTCTATGCATCGAAACGTATCCGTTTTGGTCATGCTATCT
GGCACGGTTTTGTGTTAGGCGGCAGTGTCTGCCATTTTATGGCGATCTATCTATATGTTTAA

Upstream 100 bases:

>100_bases
ATCACTCTCAGTTAATCTGAGTGCGCTATTTCTGTACAGTAGAATGGCCCATAACCCGTTTACCGGGCGAGATAATAATT
AATATTTAGGATAATCAGTA

Downstream 100 bases:

>100_bases
TACAGACACATGTTTAATACAGACACATATTTGATGCAGGTATTAGGTTTGATACGACCATCTATTTTCTAAGGCTACAG
ACTGGATGTCTGCCGAACAA

Product: putative hemolysin III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKNKSGTQPLFATPSVPAAQTATPTPAYPWAEELANSLSHGIGVVFGIVGLVLLLVQAVNSGADTKALTSYSLYGSSIIL
LFLASTLYHAIPHRRAKLWLQKFDHCAIYILIAGTYTPFLLVGLDSPLARGLMAVIWGLALIGVIFKLAFAHRFEVLSLV
TYLTMGWLSLIVIYQLAVKLEIGGLALLAIGGLLYTVGVIFYASKRIRFGHAIWHGFVLGGSVCHFMAIYLYV

Sequences:

>Translated_233_residues
MKNKSGTQPLFATPSVPAAQTATPTPAYPWAEELANSLSHGIGVVFGIVGLVLLLVQAVNSGADTKALTSYSLYGSSIIL
LFLASTLYHAIPHRRAKLWLQKFDHCAIYILIAGTYTPFLLVGLDSPLARGLMAVIWGLALIGVIFKLAFAHRFEVLSLV
TYLTMGWLSLIVIYQLAVKLEIGGLALLAIGGLLYTVGVIFYASKRIRFGHAIWHGFVLGGSVCHFMAIYLYV
>Mature_233_residues
MKNKSGTQPLFATPSVPAAQTATPTPAYPWAEELANSLSHGIGVVFGIVGLVLLLVQAVNSGADTKALTSYSLYGSSIIL
LFLASTLYHAIPHRRAKLWLQKFDHCAIYILIAGTYTPFLLVGLDSPLARGLMAVIWGLALIGVIFKLAFAHRFEVLSLV
TYLTMGWLSLIVIYQLAVKLEIGGLALLAIGGLLYTVGVIFYASKRIRFGHAIWHGFVLGGSVCHFMAIYLYV

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=229, Percent_Identity=31.0043668122271, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI52630445, Length=241, Percent_Identity=31.9502074688797, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI154759277, Length=253, Percent_Identity=28.0632411067194, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1789266, Length=214, Percent_Identity=74.2990654205608, Blast_Score=327, Evalue=5e-91,
Organism=Caenorhabditis elegans, GI71996356, Length=211, Percent_Identity=31.7535545023697, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24640324, Length=223, Percent_Identity=30.0448430493274, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25240; Mature: 25240

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKSGTQPLFATPSVPAAQTATPTPAYPWAEELANSLSHGIGVVFGIVGLVLLLVQAVN
CCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGADTKALTSYSLYGSSIILLFLASTLYHAIPHRRAKLWLQKFDHCAIYILIAGTYTPFL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEEECCCCCEE
LVGLDSPLARGLMAVIWGLALIGVIFKLAFAHRFEVLSLVTYLTMGWLSLIVIYQLAVKL
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGGLALLAIGGLLYTVGVIFYASKRIRFGHAIWHGFVLGGSVCHFMAIYLYV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNKSGTQPLFATPSVPAAQTATPTPAYPWAEELANSLSHGIGVVFGIVGLVLLLVQAVN
CCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGADTKALTSYSLYGSSIILLFLASTLYHAIPHRRAKLWLQKFDHCAIYILIAGTYTPFL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEEECCCCCEE
LVGLDSPLARGLMAVIWGLALIGVIFKLAFAHRFEVLSLVTYLTMGWLSLIVIYQLAVKL
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGGLALLAIGGLLYTVGVIFYASKRIRFGHAIWHGFVLGGSVCHFMAIYLYV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]