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The map label for this gene is ydeM [H]

Identifier: 218928017

GI number: 218928017

Start: 920856

End: 922082

Strand: Direct

Name: ydeM [H]

Synonym: YPO0841

Alternate gene names: 218928017

Gene position: 920856-922082 (Clockwise)

Preceding gene: 218928016

Following gene: 218928018

Centisome position: 19.79

GC content: 50.45

Gene sequence:

>1227_bases
ATGGCACAGCCACATACTCAACAAGCCTATTTTCACATGATGGCCAAGCCCACCAGCTATCGTTGTAATTTGGATTGTGA
ATACTGTTTTTATCTTGAAAAAGAGACGGTACTCCCTCCCCAGAAAAATCCCTCACCGACCATGAGCGACAGCATGTTAC
GGCGCTATGTGCGTGATTACTTGCGTTCTCATGCCGGGGATACGGTTGATTTTGCCTGGCAAGGTGGCGAACCAACGCTG
GCCGGGCTGGATTTTTATCGTAAGGCGGTGGAATACCAACAGCACTATGCAAACGGTAAAACTGTTACAAACAGCTTTCA
AACCAACGGCATTGCCATTAATCGCCAGTGGGCCGCATTTTTTGCCGAACACCGTTTTCTGATTGGTCTGTCGGTGGATG
GCCTTGAAGCGGTACATGATAAATACCGTATTGCCGTAAATGGTCAACCCACCTTTGCCCGCGTGAAGAAAGCGCTTGAT
CTGCTGCGTGAATATCAGGTGGATTTCAATACGTTAACCGTGGTGAATGATCAAAACTGGGATAAAGGACGTGAAACCTA
TCAGGCGCTGAAAGCGCTGGGGTCAACCTTTATGCAATTTATTCCGATTGTGGAAGTGGATACCCGTTGCCTATCGCGGA
CAACAGGCCATTACTCACCGCCAGCCAACCCTCCCATGGCTCCCTTTACTGTGCCTGCGGCGGGATATGGGCGTTTTATG
AATGACGTGTTTGATGCCTGGGTGACGGAGGATGTGGGAACCGTCTATGTCCGTGAATTTGACAGTTTGCTCGGGACCTG
GATGGGCTACCCCGCCGCTAGCTGCATACAGTCGGTGACCTGTGGTCAGGCGCTGATCATCGAAGCGAATGGGGATATCT
ACAGCTGTGATCACTATGTGTACCCAGCGCATCGTTTGGGCAACATTGCTGACACCTCGCTAGTGAAATTAGCGACATCT
CGCCAACAGCAACGCTTTGGTGATGCCAAGCAGGAAAAACTGACACAGGCGTGTATTCGCTGTGAAGTGAAAGCGCTTTG
TCAGGGGGGTTGCCCGAAGCACCGCATCATGGCGTTGCCAGATGAAAAACATAAGCACAATTACCTCTGCGCCTCCTATA
AACACTTTTTTAATCACACCGCCCCGTTGATGCAGGCCATGTGCCAGATTATTCAACGCGGGGGCATTGCTGCGGACATT
ATGCCGCAACTGACACAGCCTAAATAA

Upstream 100 bases:

>100_bases
ATTGCGTTAACTTTCATATATGTGATTCAGCGCCTTTTAGTTCTCTTTTTATTTGCGTAAATTAGTCAGTATTGTTTCAC
TTTCTCGGAACACCTATCTG

Downstream 100 bases:

>100_bases
CGCTTGAGGAACACATAATAATGAAGTTACCCGCAGGAAAAAGAAGCCTGTTGGCAGGGATGATCGCTGCCGCTGGTATG
AGTATGACACCTGTGACTCT

Product: putative regulatory protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MAQPHTQQAYFHMMAKPTSYRCNLDCEYCFYLEKETVLPPQKNPSPTMSDSMLRRYVRDYLRSHAGDTVDFAWQGGEPTL
AGLDFYRKAVEYQQHYANGKTVTNSFQTNGIAINRQWAAFFAEHRFLIGLSVDGLEAVHDKYRIAVNGQPTFARVKKALD
LLREYQVDFNTLTVVNDQNWDKGRETYQALKALGSTFMQFIPIVEVDTRCLSRTTGHYSPPANPPMAPFTVPAAGYGRFM
NDVFDAWVTEDVGTVYVREFDSLLGTWMGYPAASCIQSVTCGQALIIEANGDIYSCDHYVYPAHRLGNIADTSLVKLATS
RQQQRFGDAKQEKLTQACIRCEVKALCQGGCPKHRIMALPDEKHKHNYLCASYKHFFNHTAPLMQAMCQIIQRGGIAADI
MPQLTQPK

Sequences:

>Translated_408_residues
MAQPHTQQAYFHMMAKPTSYRCNLDCEYCFYLEKETVLPPQKNPSPTMSDSMLRRYVRDYLRSHAGDTVDFAWQGGEPTL
AGLDFYRKAVEYQQHYANGKTVTNSFQTNGIAINRQWAAFFAEHRFLIGLSVDGLEAVHDKYRIAVNGQPTFARVKKALD
LLREYQVDFNTLTVVNDQNWDKGRETYQALKALGSTFMQFIPIVEVDTRCLSRTTGHYSPPANPPMAPFTVPAAGYGRFM
NDVFDAWVTEDVGTVYVREFDSLLGTWMGYPAASCIQSVTCGQALIIEANGDIYSCDHYVYPAHRLGNIADTSLVKLATS
RQQQRFGDAKQEKLTQACIRCEVKALCQGGCPKHRIMALPDEKHKHNYLCASYKHFFNHTAPLMQAMCQIIQRGGIAADI
MPQLTQPK
>Mature_407_residues
AQPHTQQAYFHMMAKPTSYRCNLDCEYCFYLEKETVLPPQKNPSPTMSDSMLRRYVRDYLRSHAGDTVDFAWQGGEPTLA
GLDFYRKAVEYQQHYANGKTVTNSFQTNGIAINRQWAAFFAEHRFLIGLSVDGLEAVHDKYRIAVNGQPTFARVKKALDL
LREYQVDFNTLTVVNDQNWDKGRETYQALKALGSTFMQFIPIVEVDTRCLSRTTGHYSPPANPPMAPFTVPAAGYGRFMN
DVFDAWVTEDVGTVYVREFDSLLGTWMGYPAASCIQSVTCGQALIIEANGDIYSCDHYVYPAHRLGNIADTSLVKLATSR
QQQRFGDAKQEKLTQACIRCEVKALCQGGCPKHRIMALPDEKHKHNYLCASYKHFFNHTAPLMQAMCQIIQRGGIAADIM
PQLTQPK

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=379, Percent_Identity=42.7440633245383, Blast_Score=344, Evalue=6e-96,
Organism=Escherichia coli, GI48994973, Length=398, Percent_Identity=42.2110552763819, Blast_Score=343, Evalue=9e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 46138; Mature: 46007

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPHTQQAYFHMMAKPTSYRCNLDCEYCFYLEKETVLPPQKNPSPTMSDSMLRRYVRDY
CCCCCHHHHHHHHHCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
LRSHAGDTVDFAWQGGEPTLAGLDFYRKAVEYQQHYANGKTVTNSFQTNGIAINRQWAAF
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEHHHHHH
FAEHRFLIGLSVDGLEAVHDKYRIAVNGQPTFARVKKALDLLREYQVDFNTLTVVNDQNW
HHCCEEEEEECCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
DKGRETYQALKALGSTFMQFIPIVEVDTRCLSRTTGHYSPPANPPMAPFTVPAAGYGRFM
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHH
NDVFDAWVTEDVGTVYVREFDSLLGTWMGYPAASCIQSVTCGQALIIEANGDIYSCDHYV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCEEECCCEE
YPAHRLGNIADTSLVKLATSRQQQRFGDAKQEKLTQACIRCEVKALCQGGCPKHRIMALP
CCHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
DEKHKHNYLCASYKHFFNHTAPLMQAMCQIIQRGGIAADIMPQLTQPK
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCC
>Mature Secondary Structure 
AQPHTQQAYFHMMAKPTSYRCNLDCEYCFYLEKETVLPPQKNPSPTMSDSMLRRYVRDY
CCCCHHHHHHHHHCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
LRSHAGDTVDFAWQGGEPTLAGLDFYRKAVEYQQHYANGKTVTNSFQTNGIAINRQWAAF
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEHHHHHH
FAEHRFLIGLSVDGLEAVHDKYRIAVNGQPTFARVKKALDLLREYQVDFNTLTVVNDQNW
HHCCEEEEEECCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
DKGRETYQALKALGSTFMQFIPIVEVDTRCLSRTTGHYSPPANPPMAPFTVPAAGYGRFM
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHH
NDVFDAWVTEDVGTVYVREFDSLLGTWMGYPAASCIQSVTCGQALIIEANGDIYSCDHYV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCEEECCCEE
YPAHRLGNIADTSLVKLATSRQQQRFGDAKQEKLTQACIRCEVKALCQGGCPKHRIMALP
CCHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
DEKHKHNYLCASYKHFFNHTAPLMQAMCQIIQRGGIAADIMPQLTQPK
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]