Click here to switch to the map view.

The map label for this gene is 218927698

Identifier: 218927698

GI number: 218927698

Start: 533725

End: 534285

Strand: Direct

Name: 218927698

Synonym: YPO0500

Alternate gene names: NA

Gene position: 533725-534285 (Clockwise)

Preceding gene: 218927697

Following gene: 218927699

Centisome position: 11.47

GC content: 43.14

Gene sequence:

>561_bases
ATGGCCAAAGATGCGAGCTCGCAAAAATTTATCGGTAGAAATAATGCACCTAGAGTGCAAATTGAATATGACGTCGAAAT
TTATGGTTCAAATAAGAAAGTAGAGTTGCCTTTTGTAACCGGCGTGATGGCTGATCTTTCTGGCCACAGAGCAAAGCCTC
TTCCTGCTGTTGAAGATCGTAAATTCCTTACTTTCGATCAGGATAATTTCGATGCCCGGATGAGAGCAATTAAGCCTCGC
CTTAAATTCTACGTAGATAACACCTTGAGTGAGGATAACGAACTCCTGGATATCGAACTGGATTTTGAGTCAATGGATGA
CTTTTCCCCCGGATCGTTAGCGCGGCGTATTCCTCAAATGGAAAAACTGCTTGAGGCACGCACCCATCTGGCTGAATTGA
TCACCTATATGGATGGTAAAACCAGCGCAGAAGAGGTGGTTAAACAACTGCTTGAACAACCTGATTTTTTACAAAATCTT
GCGACCGATGCACAGGGAACTATTTCGAAGCTCAGCCAGGATGATGATGTTTTAGTGGAAGATGACGATGGAGAAAAATA
G

Upstream 100 bases:

>100_bases
GATTTTTATTCCATTGTTGAAGAAATTCTGCCTGAAGCTGTAATTACATTAAAACAGTTTACCGGAAAAACTAACCTACC
GTTTCGATGAGGATATTTAA

Downstream 100 bases:

>100_bases
TGGAGAACATGCAGAAAGCCCAACTCAATGACACGCCAGACATCAACGTCGATCTGGCTGAAAACGAGTTAGATGACATT
TTAAAACGTTCTTTTCGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss S; Conserved Protein; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Core Protein; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPR
LKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNL
ATDAQGTISKLSQDDDVLVEDDDGEK

Sequences:

>Translated_186_residues
MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPR
LKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNL
ATDAQGTISKLSQDDDVLVEDDDGEK
>Mature_185_residues
AKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDRKFLTFDQDNFDARMRAIKPRL
KFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQMEKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNLA
TDAQGTISKLSQDDDVLVEDDDGEK

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21089; Mature: 20958

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDR
CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEECHHHHHHHHHCCCCCCCCCCCCCCC
KFLTFDQDNFDARMRAIKPRLKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQM
EEEEECCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
EKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNLATDAQGTISKLSQDDDVLVE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCCEEEE
DDDGEK
CCCCCC
>Mature Secondary Structure 
AKDASSQKFIGRNNAPRVQIEYDVEIYGSNKKVELPFVTGVMADLSGHRAKPLPAVEDR
CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEECHHHHHHHHHCCCCCCCCCCCCCCC
KFLTFDQDNFDARMRAIKPRLKFYVDNTLSEDNELLDIELDFESMDDFSPGSLARRIPQM
EEEEECCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
EKLLEARTHLAELITYMDGKTSAEEVVKQLLEQPDFLQNLATDAQGTISKLSQDDDVLVE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCCEEEE
DDDGEK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA