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The map label for this gene is rhaS [H]

Identifier: 218927537

GI number: 218927537

Start: 341050

End: 341871

Strand: Direct

Name: rhaS [H]

Synonym: YPO0332

Alternate gene names: 218927537

Gene position: 341050-341871 (Clockwise)

Preceding gene: 218927536

Following gene: 218927538

Centisome position: 7.33

GC content: 47.57

Gene sequence:

>822_bases
ATGACTGTATTGCACAGTATTGATTTTTTCTCTTCCAGCTCAGCACCTGTGGCGATTGAAGCGCGTGCGCCGCAATCGGC
ATTTCCTGAGCATCATCATGATTTTTATGAAATTGTTATTGTAGAAGAGGGGGCTGGCGTACATGTTTTTAATGGCAATC
CCTACACATTAAGTCGCGGTTGCGTCTGTTTTGTCCGTGACCATGATCGCCATTTGTTTGAATCCACGGATGATCTGTTC
CTCACCAACGTATTGTTTCGTGCCCCAGATGCCTTTCGCTTTTTATCTGGTGTCGGGCACTTCCTGCCTCGAGAATGTGA
TGGGGTCTATCCCTCCCATTGGCGGGTTAACGGCCAGGTTTTACAGCAAATAAAGTGCTTGATTGCTTGTCTGGAACACG
CCCCGAAAAGTGATCAGGTTGAGGATATCGCTCTGCATGAAAGTGTTTTTATGCAGCTATTGGTGAAACTGTGGCAAGGG
TGTCAGACGCAGGTAGGGGATGATCAGGAAGGGCGGTTATACCAACTGTTGGATTGGCTACAAAATAACTATAGCGAGGC
GGTTGAATGGCCGGAATTGGCAGATCGCTTTGCATTGCCATTGCGTACTCTACATCGCCAGTTAAAAAATAAGACCGGGA
TGACGCCCCAACGCTATCTGACACGTTTGCACTTACTGCAAGCCCGTCATCAACTGTGTTACAGCGACAATAGCGTCACT
GACATTGCTTATCTGTGTGGTTTTGGCGACAGCAACCACTTCTCAACTTTATTTAAGCGCGAGTTTTCACAGTCTCCCCG
TGATTTGCGTAGCCAGCTTTAG

Upstream 100 bases:

>100_bases
TTTTAATGTCAAAAATTGAAGGTTTAGTCATCACTGCTGCTTTTACTATCGAGGACTGAAGCAGGGCGATTTCGCCGTGC
CTGTCGAAAGAGGGCAAAAG

Downstream 100 bases:

>100_bases
CCGCTTGAATTGCCCTGCAAGAAAGGGCGTGAAGGGTATTACGGTAAAAATTGAAGGGTATCACGGTAAAAATTGGCCGT
TTCAAGATAATGAACAAGTC

Product: transcriptional activator RhaS

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRGCVCFVRDHDRHLFESTDDLF
LTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQG
CQTQVGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNSVT
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL

Sequences:

>Translated_273_residues
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRGCVCFVRDHDRHLFESTDDLF
LTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQG
CQTQVGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNSVT
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL
>Mature_272_residues
TVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRGCVCFVRDHDRHLFESTDDLFL
TNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQGC
QTQVGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNSVTD
IAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=270, Percent_Identity=60, Blast_Score=337, Evalue=7e-94,
Organism=Escherichia coli, GI171474011, Length=266, Percent_Identity=31.203007518797, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31394; Mature: 31263

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRG
CCEEECCHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEECCC
CVCFVRDHDRHLFESTDDLFLTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQV
CEEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCEEECHHH
LQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQGCQTQVGDDQEGRLYQLLDWL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNSVT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure 
TVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVFNGNPYTLSRG
CEEECCHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEECCC
CVCFVRDHDRHLFESTDDLFLTNVLFRAPDAFRFLSGVGHFLPRECDGVYPSHWRVNGQV
CEEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCEEECHHH
LQQIKCLIACLEHAPKSDQVEDIALHESVFMQLLVKLWQGCQTQVGDDQEGRLYQLLDWL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNSVT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
DIAYLCGFGDSNHFSTLFKREFSQSPRDLRSQL
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA