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The map label for this gene is ychF [H]

Identifier: 218906667

GI number: 218906667

Start: 5290289

End: 5291389

Strand: Reverse

Name: ychF [H]

Synonym: BCAH820_5585

Alternate gene names: 218906667

Gene position: 5291389-5290289 (Counterclockwise)

Preceding gene: 218906668

Following gene: 218906666

Centisome position: 99.79

GC content: 36.97

Gene sequence:

>1101_bases
ATGGGATTAACGGCTGGGATTGTTGGATTACCTAACGTAGGGAAGTCCACTTTATTTAATGCAATTACACAAGCAGGAGC
AGAATCTGCGAACTATCCATTCTGTACAATTGATCCAAACGTAGGAATTGTAGAAGTACCAGATGAGCGTTTAAATAAAT
TAACGGAATTAGTAGAACCGAAAAAAACTGTTCCGACTGTATTTGAGTTTACTGATATTGCAGGTATCGTAAAAGGTGCG
AGTAAAGGTGAAGGTTTAGGAAATAAATTCTTATCTCACATTCGCCAAGTAGATGCAATTTGCCAAGTTGTTCGTTGTTT
TGAAGACGAAAATATTACGCATGTTTCAGGTAAAGTAGATCCAATTGATGATATTGAAACAATCAACTTAGAGCTAATCT
TAGCAGACTTAGAATCTGTTGATAAACGTATCGAACGTGTTGCGAAATTAGCAAGACAAAAGGATAAAGAAGCAGTATAT
GAGCATGAAATTTTAGTACGTTTAAAAGAAGCTTTTGAAGAGGGAAAACCAGCTCGTACTGTTGAATTTACAGAAGAGCA
AATGAAGATTGTTAAAGGTCTTCATTTACTGACAACGAAAGAAATGTTATACGTAGCAAACGTAAGCGAGGACGATGTTA
TCGATCCTTCTGAAAACAAATATGTACAAATGGTAAAAGAATTTGCTGCAAATGAAAATTCTCAAGTAATCGTTGTATGT
GCAAAAATCGAATCAGAAATTGCTGAGCTAGACGAAGAAGAGAAAAAAGTCTTCCTTGAGGAACTGGGCATTGAGGAATC
TGGTTTAGATCAATTAATTCGTGCTGCATATGATTTATTAGGACTTGCTACGTACTTCACAGCAGGTGTGCAAGAAGTAC
GTGCATGGACGTTCAAACAAGGTATGAAAGCACCACAATGTGCCGGCGTAATTCATACAGACTTTGAGCGTGGATTTATT
CGTGCAGAAACAGTTTCTTACGAAGATTTAATGACAAACGGTTCTATGACAGCTGCAAAAGAAGCTGGTAAAGTTCGTTT
AGAAGGAAAAGAGTATATCGTAAAGGACGGAGACGTTATGCATTTCCGTTTCAACGTTTAA

Upstream 100 bases:

>100_bases
TGCAGTGGGTAGCTGTTACTTTTTTTCGTTTGGAGGAAACTTGTCATTTTTTTCGTTACTATCTATAATGATGAAAGATT
GAGACATAGGAGTGAAAAAT

Downstream 100 bases:

>100_bases
TTTAATATTTCCTAGGAAAAATAAAGATATGAACTTGGCAAATATATTATGTGTTTGCCAAGTTTTTTATGTATGGGTGA
GTTGATTCATCTAACTTACT

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MGLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEPKKTVPTVFEFTDIAGIVKGA
SKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY
EHEILVRLKEAFEEGKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQVIVVC
AKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQGMKAPQCAGVIHTDFERGFI
RAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVMHFRFNV

Sequences:

>Translated_366_residues
MGLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEPKKTVPTVFEFTDIAGIVKGA
SKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY
EHEILVRLKEAFEEGKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQVIVVC
AKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQGMKAPQCAGVIHTDFERGFI
RAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVMHFRFNV
>Mature_365_residues
GLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEPKKTVPTVFEFTDIAGIVKGAS
KGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVYE
HEILVRLKEAFEEGKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQVIVVCA
KIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQGMKAPQCAGVIHTDFERGFIR
AETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVMHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=45.2574525745258, Blast_Score=317, Evalue=9e-87,
Organism=Homo sapiens, GI58761502, Length=228, Percent_Identity=39.4736842105263, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI24308117, Length=111, Percent_Identity=36.9369369369369, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=57.6502732240437, Blast_Score=436, Evalue=1e-123,
Organism=Escherichia coli, GI1789574, Length=134, Percent_Identity=32.089552238806, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=42.896174863388, Blast_Score=312, Evalue=2e-85,
Organism=Saccharomyces cerevisiae, GI6319499, Length=372, Percent_Identity=41.9354838709677, Blast_Score=267, Evalue=2e-72,
Organism=Saccharomyces cerevisiae, GI6321773, Length=387, Percent_Identity=38.2428940568475, Blast_Score=231, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6321649, Length=160, Percent_Identity=36.875, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321962, Length=147, Percent_Identity=27.2108843537415, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640873, Length=370, Percent_Identity=42.7027027027027, Blast_Score=299, Evalue=2e-81,
Organism=Drosophila melanogaster, GI24640877, Length=370, Percent_Identity=42.7027027027027, Blast_Score=299, Evalue=2e-81,
Organism=Drosophila melanogaster, GI24640875, Length=370, Percent_Identity=42.7027027027027, Blast_Score=299, Evalue=2e-81,
Organism=Drosophila melanogaster, GI24640879, Length=329, Percent_Identity=40.4255319148936, Blast_Score=243, Evalue=1e-64,
Organism=Drosophila melanogaster, GI24585318, Length=164, Percent_Identity=31.0975609756098, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40697; Mature: 40566

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEP
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
KKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVD
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVYEHEILVRLKEAFEEGKPART
CCCCCCEEEHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQVIVVC
EHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
AKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQ
HHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVM
CCCCCCCCCCEECHHHCCEEEEECCCHHHHHCCCCCHHHHHCCCEEECCCEEEEECCCEE
HFRFNV
EEEECC
>Mature Secondary Structure 
GLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEP
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
KKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVD
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVYEHEILVRLKEAFEEGKPART
CCCCCCEEEHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQVIVVC
EHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
AKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQ
HHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVM
CCCCCCCCCCEECHHHCCEEEEECCCHHHHHCCCCCHHHHHCCCEEECCCEEEEECCCEE
HFRFNV
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]