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The map label for this gene is ywhC [H]

Identifier: 218906555

GI number: 218906555

Start: 5175218

End: 5175892

Strand: Reverse

Name: ywhC [H]

Synonym: BCAH820_5469

Alternate gene names: 218906555

Gene position: 5175892-5175218 (Counterclockwise)

Preceding gene: 218906557

Following gene: 218906554

Centisome position: 97.61

GC content: 36.0

Gene sequence:

>675_bases
ATGGATCAGTTATTTAGATACCCGTTGCACCAAATACCTTTGGTAGCAATGGCCATTATTATTGCGTTATCTGTGCATGA
ATTTGCGCATGCATATGTTGCTTATAAATTTGGAGACGATACTGCAAAGCGGCAAGGTCGCTTAACTTTATCACCGATGG
CTCACTTAGACCCTATCGGGATGATTGCTGTATTAATTCTTGGTTTCGGTTGGGCAAGACCAGTTCCTGTTAACCCGTAC
AATTTTAAAAGACCACGTCTTGCTGGCATATTAGTTTCAATTGCAGGACCAATTAGTAACTTGATTTTAAGTGCAATTGG
TTTAATTATTTGGTATAGCTTATTAACATTTGGTGTATTAGACTCAATTCCATTTGCAGTAGCAGATACGTTAGCTCAAT
TTTTCCAGATTTTTATTATGTTGAATATCGTTTTACTGGTCTTTAACTTATTACCAATCCCGCCACTTGATGGATATCGT
GTAGTGGAGGATTTAGCACCAACAAATATTCGTGAGAAAATGACACAGTATGAAAAATACGGGGCGATTGCGTTATTAAT
TCTTGTTATTACACCGCTTAGCAATTACACAATCCAACCTATTTTTAATGTTGTCATTCCATATGTATTTGCATTTTTAA
ATAGTATCATTGCGCCTATTTTTGGCCTTTTATAA

Upstream 100 bases:

>100_bases
CTTTTATGTAAGTTACACTCTTATTATAGCGGATTATGGGGAAGAACAATCGAAAAAACAAATAATTTCTTTTTTTGACA
TATTGAAGAGGAGTTGGAGT

Downstream 100 bases:

>100_bases
TCATTAAGTGAGGAGGAATTTACATATGACAGAGAAAAAGAAAAAAATCGGTTTTAATATCGTGAAAAATGATTCAACGG
ATGGACATGGTGGATTTGGT

Product: peptidase, M50 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVLDSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYR
VVEDLAPTNIREKMTQYEKYGAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL

Sequences:

>Translated_224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVLDSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYR
VVEDLAPTNIREKMTQYEKYGAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL
>Mature_224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVLDSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYR
VVEDLAPTNIREKMTQYEKYGAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24923; Mature: 24923

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIG
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHCCCEEECCHHHCCHHH
MIAVLILGFGWARPVPVNPYNFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYRVVEDLAPTNIREKMTQYEKY
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
GAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIG
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHCCCEEECCHHHCCHHH
MIAVLILGFGWARPVPVNPYNFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYRVVEDLAPTNIREKMTQYEKY
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
GAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]