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The map label for this gene is rnhB2 [H]

Identifier: 218905782

GI number: 218905782

Start: 4424876

End: 4425304

Strand: Direct

Name: rnhB2 [H]

Synonym: BCAH820_4670

Alternate gene names: 218905782

Gene position: 4424876-4425304 (Clockwise)

Preceding gene: 218905781

Following gene: 218905783

Centisome position: 83.45

GC content: 36.6

Gene sequence:

>429_bases
TTGATAAAGGAAACAACCAAAGGTAAACTAAAAGCTTTACTACATAATAAAGCTATTACAAACTTATTAGCAAAAATCGC
ACCTACAAAACCTGAAGGCGTCTTAATCGATCAATTTACACAACCTGATACATACTACAAATATTTAGCTAAACAAAAAC
AGGTACAGCGTGAAAATGTTTATTTCGCGACGAAAGGCGAAAGCGTCCATTTAGCAGTAGCTGCTGCCTCTATTTTAGCT
CGTTACTCATTCGTAAAACAATTTGACGAACTAAGCAAAAAAGCTGGTATGCCACTTCCAAAAGGTGCTGGTAAACAAGT
TGATATCGCTGCCGCTAAATTAATTCAAAAGCTTGGTAAAGAACGATTACCTGAGTTTGTGAAACTGCATTTTGCTAATA
CGGAGAAGGCGCTTCGCTTACTAAAATAG

Upstream 100 bases:

>100_bases
AACTTAAATGACGAACAAATTACTGCCATTGCAAAACAACTTCTACACGTTGTTCCTTACAGCTCTCTCGTTCTTCATAA
CGAAAAATATAACGAGCTAT

Downstream 100 bases:

>100_bases
TATCGACAAAAACAGGAGCCTACAAACTCCTGTTTTTTTGTTTCACCCTACTATTTTCCTTATAGTTTTGTTATAATTAT
AATATACAGATTATTCTAAC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MIKETTKGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA
RYSFVKQFDELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKALRLLK

Sequences:

>Translated_142_residues
MIKETTKGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA
RYSFVKQFDELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKALRLLK
>Mature_142_residues
MIKETTKGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA
RYSFVKQFDELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKALRLLK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 15851; Mature: 15851

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKETTKGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENV
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCE
YFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPKGAGKQVDIAAAKLIQKLGK
EEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ERLPEFVKLHFANTEKALRLLK
HHCHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MIKETTKGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENV
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCE
YFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPKGAGKQVDIAAAKLIQKLGK
EEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ERLPEFVKLHFANTEKALRLLK
HHCHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA