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The map label for this gene is recJ3 [H]

Identifier: 218905702

GI number: 218905702

Start: 4347556

End: 4349217

Strand: Direct

Name: recJ3 [H]

Synonym: BCAH820_4590

Alternate gene names: 218905702

Gene position: 4347556-4349217 (Clockwise)

Preceding gene: 218905701

Following gene: 218905704

Centisome position: 81.99

GC content: 36.1

Gene sequence:

>1662_bases
ATGCATTGGAAACAACTTGATATTCCATTTGAAAATCATCCGCACTGTGCGAACATGCTGTACCTAGCAAAACATGTAAA
CATCCATCCTTTACTCGGTTATCACTTGTTTGTCCATGGTATTCAAACCGAAGAACAATTATGGTCGTTCTTATATCCTG
ATCCTTCACAATTCCACAATCCCTTTCTACTCAATGATATGAATCGAGCAGTCGATCGTATTTTAAAGGCTATTCAACAA
AGAGAAATAATTTATATCTTTGGGGATTATGACTGTGATGGCATTACTTCCTCAACAATTTTAAAACAAGCACTAGAAAA
GCTCGGTGCACATGTAATATCATGTCTTCCTTTACGAGAAGATGGATATGGACTAACACCACTTGCCGTGGATGCTCTTC
CCCAAAATGTTAGTTTACTAATTACCGTTGACAACGGCTCCAGTGCACATCCAGCTATGAAACGAGCAAAAGAAAAAGGA
ATTGATGTGATTGTTACAGATCACCATGAAGTATTAGGAGAACATCCAAGTTGTTTAGCTTTTGTGAATCCTAAACGAAA
AGATAATACATATCCATATCCGCATTTGTGCGGTGCTGGTGTTGCATTAAAATTAATACAGGCACTTTTTATGACATTAA
AGCAAGATTGGATAAAAGAAACATGGAACTATATTGAGTATGCAACAATAGGAACAATTGCCGATGTCATGCCACTAACT
GGAGAAAATAGAGCTATTTGTTGGTTTGGTCTCTATAAAATGCGAAATTGCCCAAATAAGCTTTTTCAGTTATTTCGTGA
ACAATTACAACTCAAATATATTGATAGCACTAATATTGGATTTCTCATTGGACCCATGCTGAACTCCTGCGGACGGATAT
CTGACCCTAATATCGGAGCAGCTATCCTCCAAAAAGCAACACCAACAGCAGAAGATGTTCAACTTCTTATGAATTTAAAT
AACAAGCGTAAGCAATTAACTAACAAGCAGTTCAAATTAGCAGCCGAAATCATTGAACAACAATCATTAGAAAAAGATTC
ATTACTCGTTGTACAAGGAGATTTTCACAAAGGGATTATTGGCATACTAGCTTCTAAAATTTCTAGCCATTATAAAAGGC
CCACAATTGTACTCACCCAAGATGGAGTAGGCTCTGCAAGAAGTGGAAATGGAAGCAAGTTTTCAATTATACAAGCTATT
CAATCTTGCAGTGAACTATTAAAAAAATTTGGAGGACATGATGCTGCGGCTGGATTATCTATTGCTCCAGAAGAATCACA
CATCCAACAGTTTAGAGAATGTATGCAAGAAGCAGCTCAACAGCAAAATACGTCCCAACCAACTTCATATTTTATAAGCG
AATTCCCAATCTATAACTTTCCAAATCATTTATTTGATGATTTGATGGCACTGGAACCATATGGAAATGGTCATCCAAAA
CCTTCTTTTCGAAGCAAAAACATATTTGCATGTGGACACTCCTGCTTTGGGAAAAATAAAGAACACGTTGAATTCTTTTT
TTCAAAAAAGCGAGCCTTTGCTTATTCGCATGGTCACTTATTTCAAAACTGGAATCGATATAATCGGATGGATGTTTTAT
ATACACCCCATTCTTACGAAAAACAAGATTTTCTTATCAATGATCTTCAATTAATTCAATAA

Upstream 100 bases:

>100_bases
TTATGAACAAATTTTATAAAAATGAATAAAATTACATAGAAAAAGAGAACCTTTCAATTAAACAGGTTCTCTTTTTTGTG
CCTATCCAAGGAGGTTCTTT

Downstream 100 bases:

>100_bases
AATAACGAAAGTACACTGTCTTAAAAAAGTAGTGTACCTTCGTTATTTCGTTCCACTCACTTTGTACCTGCTAATTACTA
TTCTTCTCACTAAGATCCCT

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MHWKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFHNPFLLNDMNRAVDRILKAIQQ
REIIYIFGDYDCDGITSSTILKQALEKLGAHVISCLPLREDGYGLTPLAVDALPQNVSLLITVDNGSSAHPAMKRAKEKG
IDVIVTDHHEVLGEHPSCLAFVNPKRKDNTYPYPHLCGAGVALKLIQALFMTLKQDWIKETWNYIEYATIGTIADVMPLT
GENRAICWFGLYKMRNCPNKLFQLFREQLQLKYIDSTNIGFLIGPMLNSCGRISDPNIGAAILQKATPTAEDVQLLMNLN
NKRKQLTNKQFKLAAEIIEQQSLEKDSLLVVQGDFHKGIIGILASKISSHYKRPTIVLTQDGVGSARSGNGSKFSIIQAI
QSCSELLKKFGGHDAAAGLSIAPEESHIQQFRECMQEAAQQQNTSQPTSYFISEFPIYNFPNHLFDDLMALEPYGNGHPK
PSFRSKNIFACGHSCFGKNKEHVEFFFSKKRAFAYSHGHLFQNWNRYNRMDVLYTPHSYEKQDFLINDLQLIQ

Sequences:

>Translated_553_residues
MHWKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFHNPFLLNDMNRAVDRILKAIQQ
REIIYIFGDYDCDGITSSTILKQALEKLGAHVISCLPLREDGYGLTPLAVDALPQNVSLLITVDNGSSAHPAMKRAKEKG
IDVIVTDHHEVLGEHPSCLAFVNPKRKDNTYPYPHLCGAGVALKLIQALFMTLKQDWIKETWNYIEYATIGTIADVMPLT
GENRAICWFGLYKMRNCPNKLFQLFREQLQLKYIDSTNIGFLIGPMLNSCGRISDPNIGAAILQKATPTAEDVQLLMNLN
NKRKQLTNKQFKLAAEIIEQQSLEKDSLLVVQGDFHKGIIGILASKISSHYKRPTIVLTQDGVGSARSGNGSKFSIIQAI
QSCSELLKKFGGHDAAAGLSIAPEESHIQQFRECMQEAAQQQNTSQPTSYFISEFPIYNFPNHLFDDLMALEPYGNGHPK
PSFRSKNIFACGHSCFGKNKEHVEFFFSKKRAFAYSHGHLFQNWNRYNRMDVLYTPHSYEKQDFLINDLQLIQ
>Mature_553_residues
MHWKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFHNPFLLNDMNRAVDRILKAIQQ
REIIYIFGDYDCDGITSSTILKQALEKLGAHVISCLPLREDGYGLTPLAVDALPQNVSLLITVDNGSSAHPAMKRAKEKG
IDVIVTDHHEVLGEHPSCLAFVNPKRKDNTYPYPHLCGAGVALKLIQALFMTLKQDWIKETWNYIEYATIGTIADVMPLT
GENRAICWFGLYKMRNCPNKLFQLFREQLQLKYIDSTNIGFLIGPMLNSCGRISDPNIGAAILQKATPTAEDVQLLMNLN
NKRKQLTNKQFKLAAEIIEQQSLEKDSLLVVQGDFHKGIIGILASKISSHYKRPTIVLTQDGVGSARSGNGSKFSIIQAI
QSCSELLKKFGGHDAAAGLSIAPEESHIQQFRECMQEAAQQQNTSQPTSYFISEFPIYNFPNHLFDDLMALEPYGNGHPK
PSFRSKNIFACGHSCFGKNKEHVEFFFSKKRAFAYSHGHLFQNWNRYNRMDVLYTPHSYEKQDFLINDLQLIQ

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=454, Percent_Identity=31.057268722467, Blast_Score=191, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 62739; Mature: 62739

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHWKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFHN
CCCCEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHHHCC
PFLLNDMNRAVDRILKAIQQREIIYIFGDYDCDGITSSTILKQALEKLGAHVISCLPLRE
CEEECHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEECC
DGYGLTPLAVDALPQNVSLLITVDNGSSAHPAMKRAKEKGIDVIVTDHHEVLGEHPSCLA
CCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCHHHHCCCCCEEE
FVNPKRKDNTYPYPHLCGAGVALKLIQALFMTLKQDWIKETWNYIEYATIGTIADVMPLT
EECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GENRAICWFGLYKMRNCPNKLFQLFREQLQLKYIDSTNIGFLIGPMLNSCGRISDPNIGA
CCCCEEEEEEHHHHHCCHHHHHHHHHHHHCEEEECCCCCCEEECHHHHHCCCCCCCCCCH
AILQKATPTAEDVQLLMNLNNKRKQLTNKQFKLAAEIIEQQSLEKDSLLVVQGDFHKGII
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
GILASKISSHYKRPTIVLTQDGVGSARSGNGSKFSIIQAIQSCSELLKKFGGHDAAAGLS
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
IAPEESHIQQFRECMQEAAQQQNTSQPTSYFISEFPIYNFPNHLFDDLMALEPYGNGHPK
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHEECCCCCCCCC
PSFRSKNIFACGHSCFGKNKEHVEFFFSKKRAFAYSHGHLFQNWNRYNRMDVLYTPHSYE
CCCCCCCEEEECHHHCCCCHHHHHHHHHHHHHEEECCCHHHHCCCCCCCEEEEECCCCCC
KQDFLINDLQLIQ
CCHHHHHHHHHCC
>Mature Secondary Structure
MHWKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFHN
CCCCEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHHHCC
PFLLNDMNRAVDRILKAIQQREIIYIFGDYDCDGITSSTILKQALEKLGAHVISCLPLRE
CEEECHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEECC
DGYGLTPLAVDALPQNVSLLITVDNGSSAHPAMKRAKEKGIDVIVTDHHEVLGEHPSCLA
CCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCHHHHCCCCCEEE
FVNPKRKDNTYPYPHLCGAGVALKLIQALFMTLKQDWIKETWNYIEYATIGTIADVMPLT
EECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GENRAICWFGLYKMRNCPNKLFQLFREQLQLKYIDSTNIGFLIGPMLNSCGRISDPNIGA
CCCCEEEEEEHHHHHCCHHHHHHHHHHHHCEEEECCCCCCEEECHHHHHCCCCCCCCCCH
AILQKATPTAEDVQLLMNLNNKRKQLTNKQFKLAAEIIEQQSLEKDSLLVVQGDFHKGII
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
GILASKISSHYKRPTIVLTQDGVGSARSGNGSKFSIIQAIQSCSELLKKFGGHDAAAGLS
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
IAPEESHIQQFRECMQEAAQQQNTSQPTSYFISEFPIYNFPNHLFDDLMALEPYGNGHPK
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHEECCCCCCCCC
PSFRSKNIFACGHSCFGKNKEHVEFFFSKKRAFAYSHGHLFQNWNRYNRMDVLYTPHSYE
CCCCCCCEEEECHHHCCCCHHHHHHHHHHHHHEEECCCHHHHCCCCCCCEEEEECCCCCC
KQDFLINDLQLIQ
CCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]