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The map label for this gene is deoB [H]

Identifier: 218905227

GI number: 218905227

Start: 3928698

End: 3929882

Strand: Reverse

Name: deoB [H]

Synonym: BCAH820_4111

Alternate gene names: 218905227

Gene position: 3929882-3928698 (Counterclockwise)

Preceding gene: 218905228

Following gene: 218905226

Centisome position: 74.11

GC content: 38.4

Gene sequence:

>1185_bases
ATGAATAAATATAAACGTATATTCCTAGTCGTAATGGACTCTGTTGGAATCGGTGAAGCACCAGATGCTGAACAATTTGG
TGATTTAGGATCTGATACAATTGGTCACATTGCTGAACATATGAATGGATTACACATGCCTAACATGGTGAAATTAGGTC
TTGGTAACATTCGTGAAATGAAAGGCATCTCTAAAGTAGAAAAACCACTTGGATATTATACAAAAATGCAAGAGAAATCT
ACTGGTAAAGATACAATGACAGGGCACTGGGAAATTATGGGTCTTTACATTGATACACCATTCCAAGTGTTCCCTGAAGG
ATTCCCAAAAGAATTACTTGATGAATTAGAAGAAAAAACAGGTCGTAAAATCATCGGTAATAAACCAGCTTCTGGAACTG
AAATTCTTGATGAACTTGGTCAAGAACAAATGGAAACAGGCTCTTTAATTGTTTACACTTCTGCTGATAGCGTTCTGCAA
ATCGCAGCACACGAAGAAGTAGTACCGCTTGATGAGTTGTATAAAATTTGTAAAATTGCACGTGAATTAACGTTAGATGA
GAAGTACATGGTAGGTCGCGTTATTGCTCGTCCATTCGTTGGTGAGCCTGGAAACTTTACACGTACACCGAACCGTCATG
ACTATGCATTAAAACCATTCGGCCGTACAGTAATGAATGAATTAAAAGATAGTGATTATGATGTGATTGCTATCGGTAAA
ATCTCTGACATCTATGATGGTGAAGGCGTAACTGAATCACTTCGTACGAAGTCTAACATGGATGGAATGGATAAGCTTGT
AGATACATTAAATATGGACTTTACAGGTCTTAGCTTCTTAAACTTAGTTGACTTTGATGCACTATTTGGTCACCGTCGTG
ACCCACAAGGATATGGAGAAGCTCTGCAAGAATATGATGCACGTCTTCCAGAAGTATTCGAAAAACTAAAAGAAGATGAT
CTATTATTAATTACAGCAGACCACGGTAATGACCCAGTTCACCACGGTACTGACCATACACGTGAATATGTACCGTTATT
AGCATATAGCCCAAGCATGAAAGAAGGCGGACAAGAGTTACCACTTCGTCAAACATTTGCTGATATTGGTGCAACTGTAG
CAGAAAACTTCGGTGTGAAAATGCCAGAATACGGAACAAGCTTCTTAAACGAGCTAAAGAAATAG

Upstream 100 bases:

>100_bases
TAATGAGAACGAAAGATAATTCTTATGGAGAACAGTTTCACTTTATAGCGTTTTGAACATACTACAAGAAGTAGAACTGA
ACTTATAGGAGGTCGCAGTT

Downstream 100 bases:

>100_bases
GGGGATAAACAAATGAATCGTGAACTTATTACAAAATCAGCTTCATACTTAAAAGAGAAATTTCAAGAGACACCACAAGT
AGGACTAATCCTTGGATCTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK

Sequences:

>Translated_394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
>Mature_394_residues
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKS
TGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQ
IAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFEKLKEDD
LLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNELKK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=412, Percent_Identity=46.3592233009709, Blast_Score=340, Evalue=9e-95,
Organism=Escherichia coli, GI1789781, Length=434, Percent_Identity=26.9585253456221, Blast_Score=121, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44114; Mature: 44114

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREM
CCCHHEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCHHHH
KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHC
GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA
CCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEECC
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQEL
HHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHEEECCCHHCCCCCC
PLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLHMPNMVKLGLGNIREM
CCCHHEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCHHHH
KGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHC
GRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIA
CCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGK
HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEECC
ISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGE
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
ALQEYDARLPEVFEKLKEDDLLLITADHGNDPVHHGTDHTREYVPLLAYSPSMKEGGQEL
HHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHEEECCCHHCCCCCC
PLRQTFADIGATVAENFGVKMPEYGTSFLNELKK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA