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The map label for this gene is ytrA [H]

Identifier: 218905214

GI number: 218905214

Start: 3918747

End: 3919166

Strand: Direct

Name: ytrA [H]

Synonym: BCAH820_4098

Alternate gene names: 218905214

Gene position: 3918747-3919166 (Clockwise)

Preceding gene: 218905199

Following gene: 218905215

Centisome position: 73.9

GC content: 35.48

Gene sequence:

>420_bases
TTGCATATTCAACTTGATCCAAGAAGCAACACTCCGATATGGGAACAAATTGTTCAAAATATAAAAGAACTCGTATTGAA
AAACATGTTAGCTCCAAGTGATAAACTTCCTTCTGTACGTGAACTCGCTTCTTTACTCGTTATTAATCCAAATACAGTGA
GTAAAGCGTACCAAGAGTTAGAGCGACAAGGGATTATTGAAACATTACGAGGAAAAGGAACATTTGTATCCCAATCGATT
ACCCCAACATTAGACGAAAGGAAAATCGCTATGGTTGAAAAGCAATTTCATCAATTACTATTAGAAGCCTCTTATCTTGG
TGTTACGAAAGATAAAATTCATGATTGGATAGATTCATACTACAAAGAGATTGGAGGAAATGCAGATGCTGAAAGTGACA
AGCTTGAAGAAAACGATTGA

Upstream 100 bases:

>100_bases
CTAACATTTTCAGTTGACAAACACATTCATCACCTATATCTTATTAAGTGTACTACACACATTAGTACACTTAATACATG
TCAGGAAGGAGACATTGCTC

Downstream 100 bases:

>100_bases
TAGTCAAACGATTTTAGAAGATGTTTCTTTCACATTACAGAGAGGAAGTATCATCGGATTACTCGGAAGAAACGGTGCGG
GGAAAACAACTTTATTACGA

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MHIQLDPRSNTPIWEQIVQNIKELVLKNMLAPSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKGTFVSQSI
TPTLDERKIAMVEKQFHQLLLEASYLGVTKDKIHDWIDSYYKEIGGNADAESDKLEEND

Sequences:

>Translated_139_residues
MHIQLDPRSNTPIWEQIVQNIKELVLKNMLAPSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKGTFVSQSI
TPTLDERKIAMVEKQFHQLLLEASYLGVTKDKIHDWIDSYYKEIGGNADAESDKLEEND
>Mature_139_residues
MHIQLDPRSNTPIWEQIVQNIKELVLKNMLAPSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKGTFVSQSI
TPTLDERKIAMVEKQFHQLLLEASYLGVTKDKIHDWIDSYYKEIGGNADAESDKLEEND

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 15834; Mature: 15834

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIQLDPRSNTPIWEQIVQNIKELVLKNMLAPSDKLPSVRELASLLVINPNTVSKAYQEL
CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
ERQGIIETLRGKGTFVSQSITPTLDERKIAMVEKQFHQLLLEASYLGVTKDKIHDWIDSY
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YKEIGGNADAESDKLEEND
HHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHIQLDPRSNTPIWEQIVQNIKELVLKNMLAPSDKLPSVRELASLLVINPNTVSKAYQEL
CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
ERQGIIETLRGKGTFVSQSITPTLDERKIAMVEKQFHQLLLEASYLGVTKDKIHDWIDSY
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YKEIGGNADAESDKLEEND
HHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]