Click here to switch to the map view.

The map label for this gene is ymfC [H]

Identifier: 218904921

GI number: 218904921

Start: 3639162

End: 3639887

Strand: Reverse

Name: ymfC [H]

Synonym: BCAH820_3805

Alternate gene names: 218904921

Gene position: 3639887-3639162 (Counterclockwise)

Preceding gene: 218904922

Following gene: 218904920

Centisome position: 68.64

GC content: 36.64

Gene sequence:

>726_bases
ATGTCAGTAAAATCCGATAGTCGTCACCTATATTTACGGGTGATTGATCACATCAAAGAAAAGATTAAAGATGGGGCTTA
CAAAGAAAGGCAAAAGTTGCCATCAGAGTTTGATTTAGCGAAAGAACTTGGCGTAAGTAGAGCGACTTTAAGGGAAGCGC
TGCGTATTTTAGAAGAAGAAAATGTTGTCATTCGTAGACATGGTGTAGGAACATTTGTAAATGCAAAACCGCTATTTTCT
TCTGGGATTGAACAACTTTCTAGTATTACAGATATGATTTCTAGTGTGGGGAAAACACCAGGAACTATCTTTTTATCATC
ATCTACAACAAGTTTAACAGAAGAAGAAAAAGAGAAGTTTAATAGTGAAGATGGTTTTAATGCAGTGATGATTGAGCGTG
TGCGTACAGCAGATGGGGAACCTGTTGTATATTGTATCGATAAACTTGCAAAAGAAATCTTGCCAGATTTATCGGGATAC
AACGAAGAATCATTGCTTACAGTGATACATAACAATACGCACAAACGTATCACATACGCAGTTGCTCATATTGAGCCAAT
TGGCTATCATCCGAAAATCTCACCGATTTTAGAATGTGAACCGGAAACGGCACTGCTAGTATTAAAACAAATGCACTATG
ATCAAAATGATGAGCCAATCTTATATTCTATCAATTACTTTAGAGCTGATAAGTTTAGCTTCCACGTACTAAGAAAACGT
ATGTAG

Upstream 100 bases:

>100_bases
TTATTTTTAGTGTGTAGCAATTTTTATTATGTTGTAAGTTGAAAAAAGAGAAAAGAAGTCTTACATCAGAGGTCGAATAA
TTGAAATGCGGGGGAGTCTT

Downstream 100 bases:

>100_bases
GTAAGTTCCTTTTTAGGGAGGTGACAGCAAGAAGTTAGGGACAGCAGCGTATAAAAAATAGACAAATCATTTCAGGAGGG
GTTTCTAGTATGAAGAAAAA

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFS
SGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGY
NEESLLTVIHNNTHKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
M

Sequences:

>Translated_241_residues
MSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFS
SGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGY
NEESLLTVIHNNTHKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
M
>Mature_240_residues
SVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFSS
GIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYN
EESLLTVIHNNTHKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKRM

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=237, Percent_Identity=26.1603375527426, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI87082252, Length=240, Percent_Identity=25.4166666666667, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27468; Mature: 27337

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEE
CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHC
NVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKF
CEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC
NSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNTHKRITYA
CCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE
VAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
EEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHC
M
C
>Mature Secondary Structure 
SVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEE
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHC
NVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKF
CEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC
NSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNTHKRITYA
CCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE
VAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKR
EEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHC
M
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]