Click here to switch to the map view.

The map label for this gene is dppE [H]

Identifier: 218903970

GI number: 218903970

Start: 2707150

End: 2708772

Strand: Reverse

Name: dppE [H]

Synonym: BCAH820_2854

Alternate gene names: 218903970

Gene position: 2708772-2707150 (Counterclockwise)

Preceding gene: 218903971

Following gene: 218903969

Centisome position: 51.08

GC content: 33.89

Gene sequence:

>1623_bases
ATGAAAAAATTTGTTCGCTACTCATTAGTTAGTACTCTATTCGTTTCTTCGATTTTAGTTGGCTGCGGAAAAGAAAAAAC
AACGACAAAGCCGAAAGATGAGAAGAAAGTATTACAGTTACTAGAAACGGGTGAAATTCCATCGTTACATTCAGGGAAAG
TAACAGATGCAGTATCATTTAACGTTTTAAATAACGTAATGGAAGGATTATTCCGTTTATCGAAAGATGATGAAGTGATT
GAGGCTGGAGCACAAAAATATGAAGTGAGTAAAGATGGGAAAACATATACATTCCATTTGCGTGATGCGAAATGGTCTAA
CGGAGATCCAGTAACAGCGCAAGATTACGTATATGCTTGGAAGCAGCTTATTAACCCGGATACAGCTTCTCAATATGCAT
ACATTGCGTACGATGTGAAAAATGCAGAGAAAATAAATAAGAAACAACTAGGGTTAGATGAATTAGGAGTAAAAGCAAAG
GATGATAAAACGTTCGTTGTAGAGTTAGAACATCCTGTACCGTATTTTACGAAACTACTTATTTTACCATCCTTCTATCC
AATTAACGAAAAATATGCGAAAGAGCAAGGTGATAAATATGGATTAGAAGCAAATAAAGCGATATATAATGGGCCATTTA
CATTATCTGATTGGAAGCATGAAGCTAGTTTTACGATGAAGAAAAACGATAAGTATTGGGATAAAGAAGAAGTGAAGCTA
GATGAAGTAAACTATCAAATTGTTAAAGAAATTTCAACTGCGGTAAATTTATATGAAACAGATAAAGTTGATAGAGCTGT
CATTTCTACAGAATTCGTAGATAAATATAAAAATAATAAAGAGCTAAAACAATATACAGATCCAGTTATGTACTTCTTCC
GATTTAATGAAAATGTGCCGATTCTTAAAAATAAAAATGCACGTCTTGCACTAAGTACAGTGTTTGATAAGAAAGGACTT
GCGACTTCATTTTTAAATGATGGTTCGGTTGCTGCAAACTATTACGTACCAAAAGGATTTTTAAAAGGTCCAGATAAAAA
AGATTTTAGAAGTACGGCAGGTGAATTTAATAAAACTGATGTAAAACAGGCGAAAGAATATTGGGAAAAGGCGAAGCAAG
AGACTGGTACAAATGAAGTAACGCTTGAGTTATTAAACTATGATTTAGAAAACTTCAAAAAAGTAGGAGAATATATTAAA
GAGCAGCTTGAGAAAAACTTACCTGGCTTAAAGGTAAATGTGAAATTACAACCACACACGCAAAAATTAGCGCTAGAGAA
GAAGAAAGAATATGAAATGTCGTTATCACGCTGGTTACCAGATTATCCAGATCCAATGACTTACTTAGAAGTATTCCTTT
CTGGAAGCAGTGTAAACAATACTGAATATGCAAATCCGGAATATGATGCGTTAATTAAGAAGATTAAAACAGAATTAGGT
AATGATGAAAAGGCTCGCTGGAAAGCACTACAAGATGCTGAAAAAATGCTACTTGATGATGCAGTTATTGCTCCAGTATT
CCAGCGCGGATTATCTTACTTACAAAAGCCATATGTGAAAGATTTATACGTACATCAATTTGGACCAGCAACAAGTTTAA
AATGGGCAGATGTCCAAAAATAA

Upstream 100 bases:

>100_bases
AAAGATCAGTAGAGATTATACCGTTAAATACACCTGGATATATAGAAGAATACGCTGGTGCTCGTCGTTACTTACCTTAA
AAAATAGAGGGGGTTTTCAA

Downstream 100 bases:

>100_bases
AGGATGAGTAAACAGACTCCACGTGTGTGGTAGTCTGTTTTTTTAGTTAAAGTCAGGTGAATAGTACATGGTATAATTTA
CTAGTCTGTATAAAATTTTG

Product: putative oligopeptide ABC transporter, oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MKKFVRYSLVSTLFVSSILVGCGKEKTTTKPKDEKKVLQLLETGEIPSLHSGKVTDAVSFNVLNNVMEGLFRLSKDDEVI
EAGAQKYEVSKDGKTYTFHLRDAKWSNGDPVTAQDYVYAWKQLINPDTASQYAYIAYDVKNAEKINKKQLGLDELGVKAK
DDKTFVVELEHPVPYFTKLLILPSFYPINEKYAKEQGDKYGLEANKAIYNGPFTLSDWKHEASFTMKKNDKYWDKEEVKL
DEVNYQIVKEISTAVNLYETDKVDRAVISTEFVDKYKNNKELKQYTDPVMYFFRFNENVPILKNKNARLALSTVFDKKGL
ATSFLNDGSVAANYYVPKGFLKGPDKKDFRSTAGEFNKTDVKQAKEYWEKAKQETGTNEVTLELLNYDLENFKKVGEYIK
EQLEKNLPGLKVNVKLQPHTQKLALEKKKEYEMSLSRWLPDYPDPMTYLEVFLSGSSVNNTEYANPEYDALIKKIKTELG
NDEKARWKALQDAEKMLLDDAVIAPVFQRGLSYLQKPYVKDLYVHQFGPATSLKWADVQK

Sequences:

>Translated_540_residues
MKKFVRYSLVSTLFVSSILVGCGKEKTTTKPKDEKKVLQLLETGEIPSLHSGKVTDAVSFNVLNNVMEGLFRLSKDDEVI
EAGAQKYEVSKDGKTYTFHLRDAKWSNGDPVTAQDYVYAWKQLINPDTASQYAYIAYDVKNAEKINKKQLGLDELGVKAK
DDKTFVVELEHPVPYFTKLLILPSFYPINEKYAKEQGDKYGLEANKAIYNGPFTLSDWKHEASFTMKKNDKYWDKEEVKL
DEVNYQIVKEISTAVNLYETDKVDRAVISTEFVDKYKNNKELKQYTDPVMYFFRFNENVPILKNKNARLALSTVFDKKGL
ATSFLNDGSVAANYYVPKGFLKGPDKKDFRSTAGEFNKTDVKQAKEYWEKAKQETGTNEVTLELLNYDLENFKKVGEYIK
EQLEKNLPGLKVNVKLQPHTQKLALEKKKEYEMSLSRWLPDYPDPMTYLEVFLSGSSVNNTEYANPEYDALIKKIKTELG
NDEKARWKALQDAEKMLLDDAVIAPVFQRGLSYLQKPYVKDLYVHQFGPATSLKWADVQK
>Mature_540_residues
MKKFVRYSLVSTLFVSSILVGCGKEKTTTKPKDEKKVLQLLETGEIPSLHSGKVTDAVSFNVLNNVMEGLFRLSKDDEVI
EAGAQKYEVSKDGKTYTFHLRDAKWSNGDPVTAQDYVYAWKQLINPDTASQYAYIAYDVKNAEKINKKQLGLDELGVKAK
DDKTFVVELEHPVPYFTKLLILPSFYPINEKYAKEQGDKYGLEANKAIYNGPFTLSDWKHEASFTMKKNDKYWDKEEVKL
DEVNYQIVKEISTAVNLYETDKVDRAVISTEFVDKYKNNKELKQYTDPVMYFFRFNENVPILKNKNARLALSTVFDKKGL
ATSFLNDGSVAANYYVPKGFLKGPDKKDFRSTAGEFNKTDVKQAKEYWEKAKQETGTNEVTLELLNYDLENFKKVGEYIK
EQLEKNLPGLKVNVKLQPHTQKLALEKKKEYEMSLSRWLPDYPDPMTYLEVFLSGSSVNNTEYANPEYDALIKKIKTELG
NDEKARWKALQDAEKMLLDDAVIAPVFQRGLSYLQKPYVKDLYVHQFGPATSLKWADVQK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=534, Percent_Identity=29.0262172284644, Blast_Score=199, Evalue=5e-52,
Organism=Escherichia coli, GI87081878, Length=535, Percent_Identity=29.7196261682243, Blast_Score=192, Evalue=5e-50,
Organism=Escherichia coli, GI1789397, Length=489, Percent_Identity=28.6298568507157, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1787762, Length=439, Percent_Identity=22.5512528473804, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1789966, Length=477, Percent_Identity=22.8511530398323, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62051; Mature: 62051

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFVRYSLVSTLFVSSILVGCGKEKTTTKPKDEKKVLQLLETGEIPSLHSGKVTDAVSF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
NVLNNVMEGLFRLSKDDEVIEAGAQKYEVSKDGKTYTFHLRDAKWSNGDPVTAQDYVYAW
HHHHHHHHHHHHCCCCHHHHHCCCHHEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
KQLINPDTASQYAYIAYDVKNAEKINKKQLGLDELGVKAKDDKTFVVELEHPVPYFTKLL
HHHCCCCCCCCEEEEEEECCCHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCHHHHHHH
ILPSFYPINEKYAKEQGDKYGLEANKAIYNGPFTLSDWKHEASFTMKKNDKYWDKEEVKL
HHCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCHHHCCH
DEVNYQIVKEISTAVNLYETDKVDRAVISTEFVDKYKNNKELKQYTDPVMYFFRFNENVP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEECCCCC
ILKNKNARLALSTVFDKKGLATSFLNDGSVAANYYVPKGFLKGPDKKDFRSTAGEFNKTD
EEECCCCEEEEEEHHCCCCCHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHH
VKQAKEYWEKAKQETGTNEVTLELLNYDLENFKKVGEYIKEQLEKNLPGLKVNVKLQPHT
HHHHHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
QKLALEKKKEYEMSLSRWLPDYPDPMTYLEVFLSGSSVNNTEYANPEYDALIKKIKTELG
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
NDEKARWKALQDAEKMLLDDAVIAPVFQRGLSYLQKPYVKDLYVHQFGPATSLKWADVQK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKFVRYSLVSTLFVSSILVGCGKEKTTTKPKDEKKVLQLLETGEIPSLHSGKVTDAVSF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
NVLNNVMEGLFRLSKDDEVIEAGAQKYEVSKDGKTYTFHLRDAKWSNGDPVTAQDYVYAW
HHHHHHHHHHHHCCCCHHHHHCCCHHEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
KQLINPDTASQYAYIAYDVKNAEKINKKQLGLDELGVKAKDDKTFVVELEHPVPYFTKLL
HHHCCCCCCCCEEEEEEECCCHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCHHHHHHH
ILPSFYPINEKYAKEQGDKYGLEANKAIYNGPFTLSDWKHEASFTMKKNDKYWDKEEVKL
HHCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCHHHCCH
DEVNYQIVKEISTAVNLYETDKVDRAVISTEFVDKYKNNKELKQYTDPVMYFFRFNENVP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEECCCCC
ILKNKNARLALSTVFDKKGLATSFLNDGSVAANYYVPKGFLKGPDKKDFRSTAGEFNKTD
EEECCCCEEEEEEHHCCCCCHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHH
VKQAKEYWEKAKQETGTNEVTLELLNYDLENFKKVGEYIKEQLEKNLPGLKVNVKLQPHT
HHHHHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
QKLALEKKKEYEMSLSRWLPDYPDPMTYLEVFLSGSSVNNTEYANPEYDALIKKIKTELG
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
NDEKARWKALQDAEKMLLDDAVIAPVFQRGLSYLQKPYVKDLYVHQFGPATSLKWADVQK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]