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The map label for this gene is ydjA [H]

Identifier: 218902128

GI number: 218902128

Start: 978796

End: 980070

Strand: Direct

Name: ydjA [H]

Synonym: BCAH820_1010

Alternate gene names: 218902128

Gene position: 978796-980070 (Clockwise)

Preceding gene: 218902127

Following gene: 218902129

Centisome position: 18.46

GC content: 28.0

Gene sequence:

>1275_bases
ATGTTGAATATTAAGGATCATTGTTTTATCGAGAATGTAAAATACAGTACGAAGAAGTTGAAAGTAAATTTAGGAGTCAA
TATTTTTAAAGCAGGCCTATGTGAAGAAGTAAATCAACTTGTTATTTTTAGGTTTGTGGGATTTTATATTAGTGACAATA
ATGAATTTATTGTGGTGTTTCCTAAGGGGTATAAGCTACCTGATTCAGAGGTGCAGCTATCTGAGGATATTGCGAATTTA
ATTAATACATTATCCAGGTATCAAAAAGAATCAAATTTTGACCCAGAGAATACTCAAATTTTTGGGGATGCTGGAAATTA
TACCAGTTTATCAGCAGCACATTGGTTAATAAAAGATTTCATAACTAACGGTATTTTTATTAATAATAAAATTAGTTATG
TAAGAAATCAAAATAATAATATTGATTGGCCAAAGACAATAAAGTATATGAATCCTGTTATTTCAAATAAACAAGTAGCT
TATTTGGAATTTGTATCGAGAAAAAAAAGAACTGATGAAAGTAATTTGTTAACAAGAGTTCATGGGTATATAGTATACCA
ATCTTTTAAAATTTTAGGTCCGTTTATTGGTTTGAAGATCCCTCCTGAATTAATTGAGTATACTAACCAATTGCTACAAG
AATATGATATAAATCAAATTATTCATTTTATTGAACAAGAAAGAAATAATTTTTTTACAGATAGAGAAGTACATCTTTGT
AATAAGTTAATTGAGTTTTTAAAAGGAAATTCTTCAGTAGAAGCGAATTCTAATATAATGTGTTTAGCTGTGAGACATTT
TCATGTTGTGTGGGAAAAAATTTGTAGTTTCTTATTTGCTAATATGTCAGCAAATAACATTATGCCTAATCCATTTTGGC
AAGTTAATGATAAAAGTATAAAAACTAGTCAAATTCCCGATGTAATGTTACGGAATAAAAATCAATTATATATTATTGAT
GCAAAATACTATACTTTATATAAGAATTTGAAAGGACTACCTGGTTGGGGCGATTTAGTTAAACAATTCTTTTACTTATA
TACGCTGAAAGATAGAGTAGACAATATTAGAGAAATGTTTAATATATTTGTATTCCCTGGAACCTCAAATGAAATTATTA
AGTATTATGGGAAATCTGCGGTAGAAGGCGTGGAATCTCTAGGTTATATATATGGATTTACTTTAGATGTTTCGAAGGCG
TTAAAGATGTATGCACATTATAATAGTAATCAAATGAAAAAGAATCTGGTTGAAGTAGTACAAAGATCGATTTAA

Upstream 100 bases:

>100_bases
ACATTTTCAGAATTGGTACAGAGTTATGAAAAGGGAGAGGAGATATTCACCTTTAATATAAATGATGTTTTAGATATTCA
AGAAAGTGAATTTGTTAGTG

Downstream 100 bases:

>100_bases
TTAATTTAAATATATTTGAATTTGAAAGAGAATGGGTAGTGTTGAACACCTTCGTTCAATTTGTGTATTTTTTATACGCA
AATTGGGAAGGTGTTTATTT

Product: hypothetical protein

Products: NA

Alternate protein names: R.BsuM; R.BsuMI; Endonuclease BsuMI component ydjA; Type II restriction enzyme BsuMI component ydjA [H]

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MLNIKDHCFIENVKYSTKKLKVNLGVNIFKAGLCEEVNQLVIFRFVGFYISDNNEFIVVFPKGYKLPDSEVQLSEDIANL
INTLSRYQKESNFDPENTQIFGDAGNYTSLSAAHWLIKDFITNGIFINNKISYVRNQNNNIDWPKTIKYMNPVISNKQVA
YLEFVSRKKRTDESNLLTRVHGYIVYQSFKILGPFIGLKIPPELIEYTNQLLQEYDINQIIHFIEQERNNFFTDREVHLC
NKLIEFLKGNSSVEANSNIMCLAVRHFHVVWEKICSFLFANMSANNIMPNPFWQVNDKSIKTSQIPDVMLRNKNQLYIID
AKYYTLYKNLKGLPGWGDLVKQFFYLYTLKDRVDNIREMFNIFVFPGTSNEIIKYYGKSAVEGVESLGYIYGFTLDVSKA
LKMYAHYNSNQMKKNLVEVVQRSI

Sequences:

>Translated_424_residues
MLNIKDHCFIENVKYSTKKLKVNLGVNIFKAGLCEEVNQLVIFRFVGFYISDNNEFIVVFPKGYKLPDSEVQLSEDIANL
INTLSRYQKESNFDPENTQIFGDAGNYTSLSAAHWLIKDFITNGIFINNKISYVRNQNNNIDWPKTIKYMNPVISNKQVA
YLEFVSRKKRTDESNLLTRVHGYIVYQSFKILGPFIGLKIPPELIEYTNQLLQEYDINQIIHFIEQERNNFFTDREVHLC
NKLIEFLKGNSSVEANSNIMCLAVRHFHVVWEKICSFLFANMSANNIMPNPFWQVNDKSIKTSQIPDVMLRNKNQLYIID
AKYYTLYKNLKGLPGWGDLVKQFFYLYTLKDRVDNIREMFNIFVFPGTSNEIIKYYGKSAVEGVESLGYIYGFTLDVSKA
LKMYAHYNSNQMKKNLVEVVQRSI
>Mature_424_residues
MLNIKDHCFIENVKYSTKKLKVNLGVNIFKAGLCEEVNQLVIFRFVGFYISDNNEFIVVFPKGYKLPDSEVQLSEDIANL
INTLSRYQKESNFDPENTQIFGDAGNYTSLSAAHWLIKDFITNGIFINNKISYVRNQNNNIDWPKTIKYMNPVISNKQVA
YLEFVSRKKRTDESNLLTRVHGYIVYQSFKILGPFIGLKIPPELIEYTNQLLQEYDINQIIHFIEQERNNFFTDREVHLC
NKLIEFLKGNSSVEANSNIMCLAVRHFHVVWEKICSFLFANMSANNIMPNPFWQVNDKSIKTSQIPDVMLRNKNQLYIID
AKYYTLYKNLKGLPGWGDLVKQFFYLYTLKDRVDNIREMFNIFVFPGTSNEIIKYYGKSAVEGVESLGYIYGFTLDVSKA
LKMYAHYNSNQMKKNLVEVVQRSI

Specific function: Recognizes the double-stranded sequence CTCGAG; the cleavage site is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018579 [H]

Pfam domain/function: PF09563 RE_LlaJI [H]

EC number: =3.1.21.4 [H]

Molecular weight: Translated: 49462; Mature: 49462

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIKDHCFIENVKYSTKKLKVNLGVNIFKAGLCEEVNQLVIFRFVGFYISDNNEFIVVF
CCCCCCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEE
PKGYKLPDSEVQLSEDIANLINTLSRYQKESNFDPENTQIFGDAGNYTSLSAAHWLIKDF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
ITNGIFINNKISYVRNQNNNIDWPKTIKYMNPVISNKQVAYLEFVSRKKRTDESNLLTRV
HHCCEEEECCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
HGYIVYQSFKILGPFIGLKIPPELIEYTNQLLQEYDINQIIHFIEQERNNFFTDREVHLC
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHH
NKLIEFLKGNSSVEANSNIMCLAVRHFHVVWEKICSFLFANMSANNIMPNPFWQVNDKSI
HHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCC
KTSQIPDVMLRNKNQLYIIDAKYYTLYKNLKGLPGWGDLVKQFFYLYTLKDRVDNIREMF
CHHCCCHHHHCCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NIFVFPGTSNEIIKYYGKSAVEGVESLGYIYGFTLDVSKALKMYAHYNSNQMKKNLVEVV
EEEEECCCCHHHHHHHCHHHHHHHHHHHHHHEEEEEHHHHHHHHHHCCCHHHHHHHHHHH
QRSI
HHCC
>Mature Secondary Structure
MLNIKDHCFIENVKYSTKKLKVNLGVNIFKAGLCEEVNQLVIFRFVGFYISDNNEFIVVF
CCCCCCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEE
PKGYKLPDSEVQLSEDIANLINTLSRYQKESNFDPENTQIFGDAGNYTSLSAAHWLIKDF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
ITNGIFINNKISYVRNQNNNIDWPKTIKYMNPVISNKQVAYLEFVSRKKRTDESNLLTRV
HHCCEEEECCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
HGYIVYQSFKILGPFIGLKIPPELIEYTNQLLQEYDINQIIHFIEQERNNFFTDREVHLC
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHH
NKLIEFLKGNSSVEANSNIMCLAVRHFHVVWEKICSFLFANMSANNIMPNPFWQVNDKSI
HHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCC
KTSQIPDVMLRNKNQLYIIDAKYYTLYKNLKGLPGWGDLVKQFFYLYTLKDRVDNIREMF
CHHCCCHHHHCCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NIFVFPGTSNEIIKYYGKSAVEGVESLGYIYGFTLDVSKALKMYAHYNSNQMKKNLVEVV
EEEEECCCCHHHHHHHCHHHHHHHHHHHHHHEEEEEHHHHHHHHHHCCCHHHHHHHHHHH
QRSI
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]