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The map label for this gene is rpl10e [H]

Identifier: 218884722

GI number: 218884722

Start: 1312215

End: 1312751

Strand: Direct

Name: rpl10e [H]

Synonym: DKAM_1411

Alternate gene names: 218884722

Gene position: 1312215-1312751 (Clockwise)

Preceding gene: 218884711

Following gene: 218884723

Centisome position: 96.12

GC content: 48.23

Gene sequence:

>537_bases
GTGATTAAGAATATGCCTATACGCCCAGCCAGGTGCTACACGCATTTCAGCGGACCACCATATACGAGGAAAGAGTATAT
TCCAGGCGTCCCCCAGCCGAAGATAACTAAGTTTGAGATGGGTAATCCAAAACTAGACTATGATTACGAGCTTGCACTAG
TCGTCGAGGAGGCAGGGCAGATAAGGCATAACGCGTTAGAGGCAGCCCGTGTAATGGCTTTAAAGAAGCTCAGCGTTGAT
GCCGGCGAGAACAACTTTTACCTTAAAGTCAAACCATATCCTCACCACGTTATCAGGGAAAACAAGATGATGGCCTTTGC
TGGTGCAGACCGTCTACAGGATGGCATGAGGCTCTCATTTGGTAAACCCATCGGGACAGCTGCACGAGTAAGCCCAGGGC
AGGAGGTAATAGTGATAAGGGTGAAGGCGGAGCATGCTAAGATAGGTAAGGAAGCATTAAAAATAGCTGCGTCGAAGCTT
CCGTTACCGACGAGAGTAATTGTTAAACCATTGAAGCCAGGTCTTCCACCACTATAG

Upstream 100 bases:

>100_bases
ATGATTCCCGGGAGTATTAAATCCTTAGGCTGAGGGTCAAGATATATAAACAGGCGGTGGGTTAAGGTTAATAAAGCCTG
ATTGCATGAATGAGGGGTAG

Downstream 100 bases:

>100_bases
CTAAGCCCTAAGCGTGCTCTCTTCTACAGGACCTGGGAACTAGGTTATCCTTATATTTGGAAACTCTTGTTTTTCCAGGT
AGAATAATATTAAGTCTTCC

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MIKNMPIRPARCYTHFSGPPYTRKEYIPGVPQPKITKFEMGNPKLDYDYELALVVEEAGQIRHNALEAARVMALKKLSVD
AGENNFYLKVKPYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARVSPGQEVIVIRVKAEHAKIGKEALKIAASKL
PLPTRVIVKPLKPGLPPL

Sequences:

>Translated_178_residues
MIKNMPIRPARCYTHFSGPPYTRKEYIPGVPQPKITKFEMGNPKLDYDYELALVVEEAGQIRHNALEAARVMALKKLSVD
AGENNFYLKVKPYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARVSPGQEVIVIRVKAEHAKIGKEALKIAASKL
PLPTRVIVKPLKPGLPPL
>Mature_178_residues
MIKNMPIRPARCYTHFSGPPYTRKEYIPGVPQPKITKFEMGNPKLDYDYELALVVEEAGQIRHNALEAARVMALKKLSVD
AGENNFYLKVKPYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARVSPGQEVIVIRVKAEHAKIGKEALKIAASKL
PLPTRVIVKPLKPGLPPL

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family [H]

Homologues:

Organism=Homo sapiens, GI223890243, Length=160, Percent_Identity=44.375, Blast_Score=128, Evalue=3e-30,
Organism=Homo sapiens, GI18152783, Length=160, Percent_Identity=44.375, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17533037, Length=174, Percent_Identity=40.2298850574713, Blast_Score=123, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6323104, Length=167, Percent_Identity=40.7185628742515, Blast_Score=124, Evalue=7e-30,
Organism=Drosophila melanogaster, GI221513696, Length=167, Percent_Identity=41.3173652694611, Blast_Score=125, Evalue=1e-29,
Organism=Drosophila melanogaster, GI221513692, Length=167, Percent_Identity=41.3173652694611, Blast_Score=125, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255 [H]

Pfam domain/function: PF00252 Ribosomal_L16 [H]

EC number: NA

Molecular weight: Translated: 19819; Mature: 19819

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNMPIRPARCYTHFSGPPYTRKEYIPGVPQPKITKFEMGNPKLDYDYELALVVEEAGQ
CCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECHHH
IRHNALEAARVMALKKLSVDAGENNFYLKVKPYPHHVIRENKMMAFAGADRLQDGMRLSF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHCCCCEEEEECCHHHCCCCEEEC
GKPIGTAARVSPGQEVIVIRVKAEHAKIGKEALKIAASKLPLPTRVIVKPLKPGLPPL
CCCCCCCEECCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCCCC
>Mature Secondary Structure
MIKNMPIRPARCYTHFSGPPYTRKEYIPGVPQPKITKFEMGNPKLDYDYELALVVEEAGQ
CCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECHHH
IRHNALEAARVMALKKLSVDAGENNFYLKVKPYPHHVIRENKMMAFAGADRLQDGMRLSF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHCCCCEEEEECCHHHCCCCEEEC
GKPIGTAARVSPGQEVIVIRVKAEHAKIGKEALKIAASKLPLPTRVIVKPLKPGLPPL
CCCCCCCEECCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA