Click here to switch to the map view.

The map label for this gene is 218884582

Identifier: 218884582

GI number: 218884582

Start: 1188634

End: 1189173

Strand: Direct

Name: 218884582

Synonym: DKAM_1271

Alternate gene names: NA

Gene position: 1188634-1189173 (Clockwise)

Preceding gene: 218884581

Following gene: 218884586

Centisome position: 87.07

GC content: 44.44

Gene sequence:

>540_bases
GTGAAGATATACGTGTTAAGGTATGGTCATAGGCCGGGTAGGGATAAACGGGTCACTACGCATGTAGCTCTTGTATCAAG
GGCTTTTGGGGCCAACGGATTCATACTTGGTGATGTCGTCGATGAGTCTATACGTAGAACCCTTGAGAAAGTCGTGGATT
TGTGGGGTGGGAGAATACATTTCGAGATGGGGGTCGACTCCTATAAGTATTGCCTTGAGTGGAAGAGAAATAGTGGGCTG
GTGGTTCATTTAACAATGTATGGACTACACGTTGATGACGTAGTCAATGAGATAAGGAATACTGGTAGAGATATACTCAT
AGTAGTGGGATCGAGAAAAGTACCCGGGTTCTTCTATGAGGTTGCAGACTATAATGTAGCTATAGGACATCAACCCCACT
CGGAGGTAGCTGCCTTAGCCATCTTTCTGGATAGATTATTCATGGGGAGAGAGTTGTCTCTTAAATTCCCTGATGCAAAG
CTCGAGATAATTCCTTCCCCACGTGGTAAAAAAGTTAGAAGGATTACTCGGGGTGAATAA

Upstream 100 bases:

>100_bases
TGGCTAGTAATGAGACCCTTATACCCATTTCCTCGGTTAAGAGGATTAATATCGATAGATTAATGGATACAGTATACATG
TTAGTTAAGGGTGGCTACCA

Downstream 100 bases:

>100_bases
TTTGTTCAGTCGTTGGGTCACTGCCTCAACATAGTTATCCTTAATAACAGTATGCATGACGCAAAGGATGCTACCAGCGT
AATCAATGGTAATAGGGTTA

Product: SpoU-like RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKIYVLRYGHRPGRDKRVTTHVALVSRAFGANGFILGDVVDESIRRTLEKVVDLWGGRIHFEMGVDSYKYCLEWKRNSGL
VVHLTMYGLHVDDVVNEIRNTGRDILIVVGSRKVPGFFYEVADYNVAIGHQPHSEVAALAIFLDRLFMGRELSLKFPDAK
LEIIPSPRGKKVRRITRGE

Sequences:

>Translated_179_residues
MKIYVLRYGHRPGRDKRVTTHVALVSRAFGANGFILGDVVDESIRRTLEKVVDLWGGRIHFEMGVDSYKYCLEWKRNSGL
VVHLTMYGLHVDDVVNEIRNTGRDILIVVGSRKVPGFFYEVADYNVAIGHQPHSEVAALAIFLDRLFMGRELSLKFPDAK
LEIIPSPRGKKVRRITRGE
>Mature_179_residues
MKIYVLRYGHRPGRDKRVTTHVALVSRAFGANGFILGDVVDESIRRTLEKVVDLWGGRIHFEMGVDSYKYCLEWKRNSGL
VVHLTMYGLHVDDVVNEIRNTGRDILIVVGSRKVPGFFYEVADYNVAIGHQPHSEVAALAIFLDRLFMGRELSLKFPDAK
LEIIPSPRGKKVRRITRGE

Specific function: Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs [H]

COG id: COG1303

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aTrm56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002845
- ProDom:   PD016584 [H]

Pfam domain/function: PF01994 DUF127 [H]

EC number: NA

Molecular weight: Translated: 20393; Mature: 20393

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIYVLRYGHRPGRDKRVTTHVALVSRAFGANGFILGDVVDESIRRTLEKVVDLWGGRIH
CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCEEE
FEMGVDSYKYCLEWKRNSGLVVHLTMYGLHVDDVVNEIRNTGRDILIVVGSRKVPGFFYE
EEECCCCEEEHEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEE
VADYNVAIGHQPHSEVAALAIFLDRLFMGRELSLKFPDAKLEIIPSPRGKKVRRITRGE
ECCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCHHHHCCCCC
>Mature Secondary Structure
MKIYVLRYGHRPGRDKRVTTHVALVSRAFGANGFILGDVVDESIRRTLEKVVDLWGGRIH
CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCEEE
FEMGVDSYKYCLEWKRNSGLVVHLTMYGLHVDDVVNEIRNTGRDILIVVGSRKVPGFFYE
EEECCCCEEEHEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEE
VADYNVAIGHQPHSEVAALAIFLDRLFMGRELSLKFPDAKLEIIPSPRGKKVRRITRGE
ECCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA