| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884187
Identifier: 218884187
GI number: 218884187
Start: 838793
End: 840157
Strand: Reverse
Name: 218884187
Synonym: DKAM_0876
Alternate gene names: NA
Gene position: 840157-838793 (Counterclockwise)
Preceding gene: 218884188
Following gene: 218884185
Centisome position: 61.54
GC content: 44.47
Gene sequence:
>1365_bases ATGAGTCAGGGGAGAACAGGATTAGTAATTCTAGCCCTAGCAATTCTGGTGCTACTCTACTTCTCGGCGGGCTATCTACT AGCATTCATTGTCGACGTATTGAAGAACAGCCCCATCATACCCGGGGTTGAAAGCTATGAAAAAGAGGCCTATATAGGGT ATTTAAAGAGTATTCCACAGATTATTGGAACAGTGCTGTCTATTCTCTGGGGTATTCTGGCAGATACGATTGGTAGAAGA AAAACAATGTCTCTAATGATAATGTTCATGTTTACAGGACTAGCCATCATACCTTTCGCAGTGAACTATGTGATGCTCCT AACATCCTTCATCATATTCGGGATCGGGTACACTGGGATAGCTCCAATAGTATATGCTTTCATAGCTGATGTACTGCCAC CAGAGAAGAGGGGTGCCGGCTATGCTGCATACTATGCATCCAGTGTCCTCGGCTTTATAGGAGCATATGTGTTCTACCTT GCTGTGAAGCCGTGGCAGACTACTTACGGTGTTCTCGGTGCAATGGTGCTCCTCACAGGGCTCATGCTACTAGCCGTGTC AAGAGGTGTTAGGATAGGGGGTGCTGAGAAAACCTCCGTGATAGAGTTCAAGCTAAGTGAAGCTGTTTCATCATTTAGAA AACCTAGCGTTATAGCTATCTTAGTGATGATTGTTTTCTGGACTATCCCGTGGGGGATGCTGACCACGTTTGCGATAGAC TACATAATGGTGAAATGGGGTGTGTCAAAGACCATTGCGTCACTAATATTAATAGTCTCGGTGGTATCGATAGCCATAGG ACACATCGTAGGCGGGATCTTAAGTGACAAGGTGGCTAGGAAGAAGGGTCCAGCAGGCAGAGTCTTCATCTCTATACTAG GCATAGGGATAGGCCTACCAGTGATGCTCTCCATGATAATATACCCGTATCCATGTGGTAATGTCGAATGGTCTATAGTG ATACAGCCACTGCTCCTAGCAGCTTTTGGAATGATGTTCACGACTATAGCTTATCCTAATATAACAGTTGTCTTAAGCGA TGTAGTCAGGGCTGAGCACCGCGGTACAGTGTTCTCAGTATACAACATACTCAACACACTTGGCTGGGCTATAGGGCCAC TGCTATATCCTACACTAGCATACATCTACATGCCACCCGATATCAGAGCAAGCGACCTGCCTAGACTGATAACACTTTAT GACCCAGAATCTATGAGGTACATCAATTCATGTATGAGTGAAATGGCGCCAGTGAGAAACGCTTACATGTACTCAGCTAC AACCATAGTGTTATTGTGGATAATATCATTGTTAATATGGATTACGATCAAGATAACCTATGAAAAAGACCGTGTCTACA ACTAG
Upstream 100 bases:
>100_bases TAGAGTTATGGATAACTGATTCGATGCATGTGAGGAGCATTTTCACCAATCCTGGTGAATACCGTGAGAAAGTTATAGGC TTCCTAGAGAGGTGTGGGTT
Downstream 100 bases:
>100_bases CTAAGTATATCGCTCAGGGGCCAGCATGTAGAACACACGTAGATCACAAGAGAGTGGCCAGAGGATTACTGAAGTGCTTC AAACACAGTAAAGAGTGTTC
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: 4-Hydroxybenzoate Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSQGRTGLVILALAILVLLYFSAGYLLAFIVDVLKNSPIIPGVESYEKEAYIGYLKSIPQIIGTVLSILWGILADTIGRR KTMSLMIMFMFTGLAIIPFAVNYVMLLTSFIIFGIGYTGIAPIVYAFIADVLPPEKRGAGYAAYYASSVLGFIGAYVFYL AVKPWQTTYGVLGAMVLLTGLMLLAVSRGVRIGGAEKTSVIEFKLSEAVSSFRKPSVIAILVMIVFWTIPWGMLTTFAID YIMVKWGVSKTIASLILIVSVVSIAIGHIVGGILSDKVARKKGPAGRVFISILGIGIGLPVMLSMIIYPYPCGNVEWSIV IQPLLLAAFGMMFTTIAYPNITVVLSDVVRAEHRGTVFSVYNILNTLGWAIGPLLYPTLAYIYMPPDIRASDLPRLITLY DPESMRYINSCMSEMAPVRNAYMYSATTIVLLWIISLLIWITIKITYEKDRVYN
Sequences:
>Translated_454_residues MSQGRTGLVILALAILVLLYFSAGYLLAFIVDVLKNSPIIPGVESYEKEAYIGYLKSIPQIIGTVLSILWGILADTIGRR KTMSLMIMFMFTGLAIIPFAVNYVMLLTSFIIFGIGYTGIAPIVYAFIADVLPPEKRGAGYAAYYASSVLGFIGAYVFYL AVKPWQTTYGVLGAMVLLTGLMLLAVSRGVRIGGAEKTSVIEFKLSEAVSSFRKPSVIAILVMIVFWTIPWGMLTTFAID YIMVKWGVSKTIASLILIVSVVSIAIGHIVGGILSDKVARKKGPAGRVFISILGIGIGLPVMLSMIIYPYPCGNVEWSIV IQPLLLAAFGMMFTTIAYPNITVVLSDVVRAEHRGTVFSVYNILNTLGWAIGPLLYPTLAYIYMPPDIRASDLPRLITLY DPESMRYINSCMSEMAPVRNAYMYSATTIVLLWIISLLIWITIKITYEKDRVYN >Mature_453_residues SQGRTGLVILALAILVLLYFSAGYLLAFIVDVLKNSPIIPGVESYEKEAYIGYLKSIPQIIGTVLSILWGILADTIGRRK TMSLMIMFMFTGLAIIPFAVNYVMLLTSFIIFGIGYTGIAPIVYAFIADVLPPEKRGAGYAAYYASSVLGFIGAYVFYLA VKPWQTTYGVLGAMVLLTGLMLLAVSRGVRIGGAEKTSVIEFKLSEAVSSFRKPSVIAILVMIVFWTIPWGMLTTFAIDY IMVKWGVSKTIASLILIVSVVSIAIGHIVGGILSDKVARKKGPAGRVFISILGIGIGLPVMLSMIIYPYPCGNVEWSIVI QPLLLAAFGMMFTTIAYPNITVVLSDVVRAEHRGTVFSVYNILNTLGWAIGPLLYPTLAYIYMPPDIRASDLPRLITLYD PESMRYINSCMSEMAPVRNAYMYSATTIVLLWIISLLIWITIKITYEKDRVYN
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49921; Mature: 49790
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQGRTGLVILALAILVLLYFSAGYLLAFIVDVLKNSPIIPGVESYEKEAYIGYLKSIPQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH IIGTVLSILWGILADTIGRRKTMSLMIMFMFTGLAIIPFAVNYVMLLTSFIIFGIGYTGI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH APIVYAFIADVLPPEKRGAGYAAYYASSVLGFIGAYVFYLAVKPWQTTYGVLGAMVLLTG HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LMLLAVSRGVRIGGAEKTSVIEFKLSEAVSSFRKPSVIAILVMIVFWTIPWGMLTTFAID HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH YIMVKWGVSKTIASLILIVSVVSIAIGHIVGGILSDKVARKKGPAGRVFISILGIGIGLP HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH VMLSMIIYPYPCGNVEWSIVIQPLLLAAFGMMFTTIAYPNITVVLSDVVRAEHRGTVFSV HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH YNILNTLGWAIGPLLYPTLAYIYMPPDIRASDLPRLITLYDPESMRYINSCMSEMAPVRN HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH AYMYSATTIVLLWIISLLIWITIKITYEKDRVYN HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC >Mature Secondary Structure SQGRTGLVILALAILVLLYFSAGYLLAFIVDVLKNSPIIPGVESYEKEAYIGYLKSIPQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH IIGTVLSILWGILADTIGRRKTMSLMIMFMFTGLAIIPFAVNYVMLLTSFIIFGIGYTGI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH APIVYAFIADVLPPEKRGAGYAAYYASSVLGFIGAYVFYLAVKPWQTTYGVLGAMVLLTG HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LMLLAVSRGVRIGGAEKTSVIEFKLSEAVSSFRKPSVIAILVMIVFWTIPWGMLTTFAID HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH YIMVKWGVSKTIASLILIVSVVSIAIGHIVGGILSDKVARKKGPAGRVFISILGIGIGLP HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH VMLSMIIYPYPCGNVEWSIVIQPLLLAAFGMMFTTIAYPNITVVLSDVVRAEHRGTVFSV HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH YNILNTLGWAIGPLLYPTLAYIYMPPDIRASDLPRLITLYDPESMRYINSCMSEMAPVRN HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH AYMYSATTIVLLWIISLLIWITIKITYEKDRVYN HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA