| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is 218883949
Identifier: 218883949
GI number: 218883949
Start: 612743
End: 614695
Strand: Direct
Name: 218883949
Synonym: DKAM_0638
Alternate gene names: NA
Gene position: 612743-614695 (Clockwise)
Preceding gene: 218883948
Following gene: 218883950
Centisome position: 44.88
GC content: 43.88
Gene sequence:
>1953_bases ATGCGTAGACTACTTGTTATCTCATTATTAATACTCTCACTACTAATAGTTCCAACTATCCTACAGGTGGCACGGGCTGA ACCCCAGCAGCCCCTGAGGACGATCACAGTGGCTGTTGACCTAGCCCATGGCGAGAGTGATAAGTATTTGAATTATATAA TGGGGAATCTGACGTTCGTCAACTGGAAGACTATACCTAAAGGAACAACTATAACAAACGATATATTAAATGATGTCGAC ATACTGCTAATAGGTCAGCCAACAGTCGCGTTTGCCCCGAGTGAATTAGATGCTATATACAACTGGATTAACACCGGTCA TAAGGTATTATATATAGCTGGAGATAGCGATTATGGGCCCGGCCCCACTACTATAGATAATGTTAACAAGGTCCTCGAAT ACATGGGAGCCAAATTAAGGCTCGAACAGGCTTCAGCATACTCCGATCCCTCAATGAACTATACTTATAAGGGGACAACA TATCCAACTTGTGCGCAGGCATACTATAGAATGCTTGCATTCGTTGAGCCAGATAACATACCCGGCCTCTACACCTGGAT GCTGGATCAAAACATTACAAAACCCATATTAATGCATGGACCGGGCGCAGTAATATGGGTTGATGATCAAGGGAACTATC ATGATCCCGTTAAAGAGACGTTCCCAGGACTTATCAGGATAGCCTGGTTCCATAAAGCCTACATAGGTGATAATAATCCA CCAGCAGCATACGTATACGATCCTATATTCTATGGCCAGGGGGCAGGGTGGTTCGATTTCATCGGTTATGCAGCTGAGTA CTGGAGTGATAAAAACGTTGTTATAACCGTGGCGTCGGAATCTCTCTACGGTGACTACGAACCTGCATGGGCTTCCTTAT ATTATGGTGTACCATTGGATGGGCCTGGATTCGTTGAAAACTTGTTGAAGTGGTGGATAAAAGTCGTTATACAGCCGAGC TACATGGCTGAGAATGTTCTTGAGGTAAGTGATCCAACTGGTGATGACAAGGGCCAGGGAACCATTCTATATCCTACCAA CACTGTGTTTAAACCCGGTGTATTTGACCTAGTTAACTTCAAGGTATTACAGGACGAAGACTTCATATATCTACAGGTAA AGGTCAGGGATCTTGGAGGCAATCCATGGAATGGGCCAAACGGCTTCAGCCTACAACACGTCCAGATCTACATTGGGACA ACAAATAAATCACTACCAGTCAATACTTCTACATTTGGCCTACATGTAGATCTCGCGCCAGGCTGGAACTACGCGATAAT AGCAGTGCCTGGTTGGGGTAATACACCATATCCGGATGGAGAAGTATCAGCCCTATATGGGGCTGATAATAAGCTTATAG TAGATGAATATAACAATACCACATTATTCGATGTCTATGCTTATACTGACATCAATATAATCGAGGTTAAAATAGCAAAG AGCCTCTTAAGTGATGTAGACAACATCGGGAGCTGGATATGGTACGTCTTTCTAACTAGTTACGATGGATACGGTGAATT AAAGATTCGGAGTATACAAGCCGGTGACCCGGGCGAGTGGGCACTGGGAGGCGGTGATGCAACAGCCATACTTGCTGGCG TGCAGCCGAAAGTAGTAGACTTACTAGCTCCAACGGATCAGGATCAATATAATATGTTGAAGAGTTATGATGCGAGCGCT GGAAAGCTTGCTGTGGTTTACGGTATAAAGGGTGGTGTAATATACTATCCTCCTGTAACAGTAACTGTTACCACGACTGT CACTACTACGGTAACTGATACGGTGACATCAACTGTTTCTACAACCATAACAACCACAAAGACCGATACAAGTACGAGTA CGCAATACGTATCCGAGACTGTTACCCAGCCAGATATGACTATTACAGGAATAGCTGCAGTGGTAGCTCTAATAGTGGGT CTAGCCATTGGAATGTTATTAAAGAGGAAATAA
Upstream 100 bases:
>100_bases GACGAGGAGTGGTGGAAAATAGTCTCCCCTATATTTGAAGCTGGCCAATACTAAACATTTTTTAACTATTCACCATAATA TAATTTATGAGGTGGAGTGA
Downstream 100 bases:
>100_bases ATGGGATCACTTTTTTTAAATATCTTCATTAAATAGTCTTACTTCCCGGTAAAATACATTCTCGGCGGAGGCTTTTTCTA GGCGTCTTGAAAGCCCTGGC
Product: Membrane-anchored protein putative to be involved in regulation of amylopullulanase-like protein
Products: NA
Alternate protein names: Pullulanase; Glycoside Hydrolase Family; Glycoside Hydrolase Family Protein; Arabinogalactan Endo-1 4-Beta-Galactosidase; Pullulanase Glycoside Hydrolase Family; Amylopullulanase Related Protein
Number of amino acids: Translated: 650; Mature: 650
Protein sequence:
>650_residues MRRLLVISLLILSLLIVPTILQVARAEPQQPLRTITVAVDLAHGESDKYLNYIMGNLTFVNWKTIPKGTTITNDILNDVD ILLIGQPTVAFAPSELDAIYNWINTGHKVLYIAGDSDYGPGPTTIDNVNKVLEYMGAKLRLEQASAYSDPSMNYTYKGTT YPTCAQAYYRMLAFVEPDNIPGLYTWMLDQNITKPILMHGPGAVIWVDDQGNYHDPVKETFPGLIRIAWFHKAYIGDNNP PAAYVYDPIFYGQGAGWFDFIGYAAEYWSDKNVVITVASESLYGDYEPAWASLYYGVPLDGPGFVENLLKWWIKVVIQPS YMAENVLEVSDPTGDDKGQGTILYPTNTVFKPGVFDLVNFKVLQDEDFIYLQVKVRDLGGNPWNGPNGFSLQHVQIYIGT TNKSLPVNTSTFGLHVDLAPGWNYAIIAVPGWGNTPYPDGEVSALYGADNKLIVDEYNNTTLFDVYAYTDINIIEVKIAK SLLSDVDNIGSWIWYVFLTSYDGYGELKIRSIQAGDPGEWALGGGDATAILAGVQPKVVDLLAPTDQDQYNMLKSYDASA GKLAVVYGIKGGVIYYPPVTVTVTTTVTTTVTDTVTSTVSTTITTTKTDTSTSTQYVSETVTQPDMTITGIAAVVALIVG LAIGMLLKRK
Sequences:
>Translated_650_residues MRRLLVISLLILSLLIVPTILQVARAEPQQPLRTITVAVDLAHGESDKYLNYIMGNLTFVNWKTIPKGTTITNDILNDVD ILLIGQPTVAFAPSELDAIYNWINTGHKVLYIAGDSDYGPGPTTIDNVNKVLEYMGAKLRLEQASAYSDPSMNYTYKGTT YPTCAQAYYRMLAFVEPDNIPGLYTWMLDQNITKPILMHGPGAVIWVDDQGNYHDPVKETFPGLIRIAWFHKAYIGDNNP PAAYVYDPIFYGQGAGWFDFIGYAAEYWSDKNVVITVASESLYGDYEPAWASLYYGVPLDGPGFVENLLKWWIKVVIQPS YMAENVLEVSDPTGDDKGQGTILYPTNTVFKPGVFDLVNFKVLQDEDFIYLQVKVRDLGGNPWNGPNGFSLQHVQIYIGT TNKSLPVNTSTFGLHVDLAPGWNYAIIAVPGWGNTPYPDGEVSALYGADNKLIVDEYNNTTLFDVYAYTDINIIEVKIAK SLLSDVDNIGSWIWYVFLTSYDGYGELKIRSIQAGDPGEWALGGGDATAILAGVQPKVVDLLAPTDQDQYNMLKSYDASA GKLAVVYGIKGGVIYYPPVTVTVTTTVTTTVTDTVTSTVSTTITTTKTDTSTSTQYVSETVTQPDMTITGIAAVVALIVG LAIGMLLKRK >Mature_650_residues MRRLLVISLLILSLLIVPTILQVARAEPQQPLRTITVAVDLAHGESDKYLNYIMGNLTFVNWKTIPKGTTITNDILNDVD ILLIGQPTVAFAPSELDAIYNWINTGHKVLYIAGDSDYGPGPTTIDNVNKVLEYMGAKLRLEQASAYSDPSMNYTYKGTT YPTCAQAYYRMLAFVEPDNIPGLYTWMLDQNITKPILMHGPGAVIWVDDQGNYHDPVKETFPGLIRIAWFHKAYIGDNNP PAAYVYDPIFYGQGAGWFDFIGYAAEYWSDKNVVITVASESLYGDYEPAWASLYYGVPLDGPGFVENLLKWWIKVVIQPS YMAENVLEVSDPTGDDKGQGTILYPTNTVFKPGVFDLVNFKVLQDEDFIYLQVKVRDLGGNPWNGPNGFSLQHVQIYIGT TNKSLPVNTSTFGLHVDLAPGWNYAIIAVPGWGNTPYPDGEVSALYGADNKLIVDEYNNTTLFDVYAYTDINIIEVKIAK SLLSDVDNIGSWIWYVFLTSYDGYGELKIRSIQAGDPGEWALGGGDATAILAGVQPKVVDLLAPTDQDQYNMLKSYDASA GKLAVVYGIKGGVIYYPPVTVTVTTTVTTTVTDTVTSTVSTTITTTKTDTSTSTQYVSETVTQPDMTITGIAAVVALIVG LAIGMLLKRK
Specific function: Unknown
COG id: COG4945
COG function: function code G; Membrane-anchored protein predicted to be involved in regulation of amylopullulanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71465; Mature: 71465
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLLVISLLILSLLIVPTILQVARAEPQQPLRTITVAVDLAHGESDKYLNYIMGNLTFV CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCEEEE NWKTIPKGTTITNDILNDVDILLIGQPTVAFAPSELDAIYNWINTGHKVLYIAGDSDYGP EEEECCCCCEEHHHHHCCCEEEEECCCCEEECCHHHHHHHHHHCCCCEEEEEECCCCCCC GPTTIDNVNKVLEYMGAKLRLEQASAYSDPSMNYTYKGTTYPTCAQAYYRMLAFVEPDNI CCCCHHHHHHHHHHCCCEEEEEHHCCCCCCCCCEEECCCCCCHHHHHHHHHHEEECCCCC PGLYTWMLDQNITKPILMHGPGAVIWVDDQGNYHDPVKETFPGLIRIAWFHKAYIGDNNP CEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCHHHHCCCCEEEEEEEEEECCCCCC PAAYVYDPIFYGQGAGWFDFIGYAAEYWSDKNVVITVASESLYGDYEPAWASLYYGVPLD CEEEEECCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCC GPGFVENLLKWWIKVVIQPSYMAENVLEVSDPTGDDKGQGTILYPTNTVFKPGVFDLVNF CCHHHHHHHHHHHHHEECCCHHHCCEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEEE KVLQDEDFIYLQVKVRDLGGNPWNGPNGFSLQHVQIYIGTTNKSLPVNTSTFGLHVDLAP EEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECC GWNYAIIAVPGWGNTPYPDGEVSALYGADNKLIVDEYNNTTLFDVYAYTDINIIEVKIAK CCCEEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEEEEECCCEEEEHHHHH SLLSDVDNIGSWIWYVFLTSYDGYGELKIRSIQAGDPGEWALGGGDATAILAGVQPKVVD HHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEECCCCCCEEECCCCCEEEEECCCCEEEE LLAPTDQDQYNMLKSYDASAGKLAVVYGIKGGVIYYPPVTVTVTTTVTTTVTDTVTSTVS EECCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEECCEEEEEEEEEEEEEEHHHHCEEE TTITTTKTDTSTSTQYVSETVTQPDMTITGIAAVVALIVGLAIGMLLKRK EEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRRLLVISLLILSLLIVPTILQVARAEPQQPLRTITVAVDLAHGESDKYLNYIMGNLTFV CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCEEEE NWKTIPKGTTITNDILNDVDILLIGQPTVAFAPSELDAIYNWINTGHKVLYIAGDSDYGP EEEECCCCCEEHHHHHCCCEEEEECCCCEEECCHHHHHHHHHHCCCCEEEEEECCCCCCC GPTTIDNVNKVLEYMGAKLRLEQASAYSDPSMNYTYKGTTYPTCAQAYYRMLAFVEPDNI CCCCHHHHHHHHHHCCCEEEEEHHCCCCCCCCCEEECCCCCCHHHHHHHHHHEEECCCCC PGLYTWMLDQNITKPILMHGPGAVIWVDDQGNYHDPVKETFPGLIRIAWFHKAYIGDNNP CEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCHHHHCCCCEEEEEEEEEECCCCCC PAAYVYDPIFYGQGAGWFDFIGYAAEYWSDKNVVITVASESLYGDYEPAWASLYYGVPLD CEEEEECCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCC GPGFVENLLKWWIKVVIQPSYMAENVLEVSDPTGDDKGQGTILYPTNTVFKPGVFDLVNF CCHHHHHHHHHHHHHEECCCHHHCCEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEEE KVLQDEDFIYLQVKVRDLGGNPWNGPNGFSLQHVQIYIGTTNKSLPVNTSTFGLHVDLAP EEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECC GWNYAIIAVPGWGNTPYPDGEVSALYGADNKLIVDEYNNTTLFDVYAYTDINIIEVKIAK CCCEEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEEEEECCCEEEEHHHHH SLLSDVDNIGSWIWYVFLTSYDGYGELKIRSIQAGDPGEWALGGGDATAILAGVQPKVVD HHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEECCCCCCEEECCCCCEEEEECCCCEEEE LLAPTDQDQYNMLKSYDASAGKLAVVYGIKGGVIYYPPVTVTVTTTVTTTVTDTVTSTVS EECCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEECCEEEEEEEEEEEEEEHHHHCEEE TTITTTKTDTSTSTQYVSETVTQPDMTITGIAAVVALIVGLAIGMLLKRK EEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA