Click here to switch to the map view.

The map label for this gene is yufP [H]

Identifier: 218883931

GI number: 218883931

Start: 587984

End: 589105

Strand: Direct

Name: yufP [H]

Synonym: DKAM_0620

Alternate gene names: 218883931

Gene position: 587984-589105 (Clockwise)

Preceding gene: 218883930

Following gene: 218883932

Centisome position: 43.07

GC content: 42.69

Gene sequence:

>1122_bases
ATGCGGATACTTATAGTGAGGCGGAAGACGCCTCTGAAATATGGAACCATACTAATAATATTGCTCTCGCTAACGATAGG
TGTGGCGTTATTCACAACTATTTTAGCTATACAGGGAAGGAGTCCTGTTGAAGTATTAGGTACATTACTGATCTCGTTCG
TGTCCCCATCTATTGTGAAAGACTTCATTATCCTAACAATGCTTGGATACGCATTACTCGTGTCATTTAAGGGTGCACTA
TGGAATATTGGAGCTGAGGGGCAACTCTTCATATCAACAATACCGGTAATAGTACTGACCCTGCATGTAATGCCTAATCC
CCCCTCACAGCTACACGCTGTCACAATAATACTGCTTATAATCATTGTTTCAACGATCACTGGTGCTGCCTGGGCATCAA
TAGCCGGCTTCATTAGGGCATACCTTGAAATAGACGAGGTACCGGTGACCCTGATATTGAACTATATAGCATACTACGTA
GTAAATATCCTGGTGATAGGCCCCCTTAAAGGTACACGTGTATATGGTTATAATAGGACTGATGAAATACCCAGCATATA
TAGGCTATATGTTACCGGTTTAGAGAGAAGGTTCACGGGTAATCCTGCAGTGGATACATTCCTGGGATTCATTTATGAGG
TAATATATTATCTTCCATGGCTGGTAGCAATGATAATTATAATGTTTACTGCATGGTACCTATTAAACAAGACTCAAATA
GGGCTTAGAATAAGGATACTTGGCTCAAACCCGGACTACTTAAGAAGCGTGGGGGTGAATACACGTCTCACACTAGTCTT
AGCTTTAACTATATCAGGCGCTATAGTTGGCTTCACCTCGGCATTCTATACACTGAGCGATCTACTGAGGCTATCGTACC
CTATAGAGGGACAAACAGCTGGATATGGTTATTTAGCAATACTGGTTGCGTGGTTATCCATGCTTGATTATAAATTAATA
CCTGTCTCAGCATACATTGTCGCCTCACTCAGGACAGCCGGCATAAATCTCCAGGTTGGTGGATTAGGTGGACTAGAGCA
AACCCTGTTACTTATAGGCCTGATTCTCGCCGTGTATACCATAGTTAGATTCCTCCGCGACTATGAGGTGAGGGTGGTCT
AG

Upstream 100 bases:

>100_bases
AGTGACACCATATACGTGATGAACTCTGGGAAAGTCTACGGTCCATTTAATGCTGAAACAGTTAAAAGAAGCGAAATAGA
ACACTTAATGGTGATGTAGC

Downstream 100 bases:

>100_bases
ATGGATGGATCGGCTATAGAGGCTTTAGCTCCTTTAATAGCAGCCTTTTCAACAATGTATCTAGTTGCGGTGGGACACAG
TATAGTTGAGAAATCCGGTA

Product: Ribose ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRILIVRRKTPLKYGTILIILLSLTIGVALFTTILAIQGRSPVEVLGTLLISFVSPSIVKDFIILTMLGYALLVSFKGAL
WNIGAEGQLFISTIPVIVLTLHVMPNPPSQLHAVTIILLIIIVSTITGAAWASIAGFIRAYLEIDEVPVTLILNYIAYYV
VNILVIGPLKGTRVYGYNRTDEIPSIYRLYVTGLERRFTGNPAVDTFLGFIYEVIYYLPWLVAMIIIMFTAWYLLNKTQI
GLRIRILGSNPDYLRSVGVNTRLTLVLALTISGAIVGFTSAFYTLSDLLRLSYPIEGQTAGYGYLAILVAWLSMLDYKLI
PVSAYIVASLRTAGINLQVGGLGGLEQTLLLIGLILAVYTIVRFLRDYEVRVV

Sequences:

>Translated_373_residues
MRILIVRRKTPLKYGTILIILLSLTIGVALFTTILAIQGRSPVEVLGTLLISFVSPSIVKDFIILTMLGYALLVSFKGAL
WNIGAEGQLFISTIPVIVLTLHVMPNPPSQLHAVTIILLIIIVSTITGAAWASIAGFIRAYLEIDEVPVTLILNYIAYYV
VNILVIGPLKGTRVYGYNRTDEIPSIYRLYVTGLERRFTGNPAVDTFLGFIYEVIYYLPWLVAMIIIMFTAWYLLNKTQI
GLRIRILGSNPDYLRSVGVNTRLTLVLALTISGAIVGFTSAFYTLSDLLRLSYPIEGQTAGYGYLAILVAWLSMLDYKLI
PVSAYIVASLRTAGINLQVGGLGGLEQTLLLIGLILAVYTIVRFLRDYEVRVV
>Mature_373_residues
MRILIVRRKTPLKYGTILIILLSLTIGVALFTTILAIQGRSPVEVLGTLLISFVSPSIVKDFIILTMLGYALLVSFKGAL
WNIGAEGQLFISTIPVIVLTLHVMPNPPSQLHAVTIILLIIIVSTITGAAWASIAGFIRAYLEIDEVPVTLILNYIAYYV
VNILVIGPLKGTRVYGYNRTDEIPSIYRLYVTGLERRFTGNPAVDTFLGFIYEVIYYLPWLVAMIIIMFTAWYLLNKTQI
GLRIRILGSNPDYLRSVGVNTRLTLVLALTISGAIVGFTSAFYTLSDLLRLSYPIEGQTAGYGYLAILVAWLSMLDYKLI
PVSAYIVASLRTAGINLQVGGLGGLEQTLLLIGLILAVYTIVRFLRDYEVRVV

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4603

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851
- InterPro:   IPR002229 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 41215; Mature: 41215

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIVRRKTPLKYGTILIILLSLTIGVALFTTILAIQGRSPVEVLGTLLISFVSPSIVK
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHH
DFIILTMLGYALLVSFKGALWNIGAEGQLFISTIPVIVLTLHVMPNPPSQLHAVTIILLI
HHHHHHHHHHHHHHHHCCHHEECCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IIVSTITGAAWASIAGFIRAYLEIDEVPVTLILNYIAYYVVNILVIGPLKGTRVYGYNRT
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
DEIPSIYRLYVTGLERRFTGNPAVDTFLGFIYEVIYYLPWLVAMIIIMFTAWYLLNKTQI
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
GLRIRILGSNPDYLRSVGVNTRLTLVLALTISGAIVGFTSAFYTLSDLLRLSYPIEGQTA
EEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GYGYLAILVAWLSMLDYKLIPVSAYIVASLRTAGINLQVGGLGGLEQTLLLIGLILAVYT
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
IVRFLRDYEVRVV
HHHHHHHCCEEEC
>Mature Secondary Structure
MRILIVRRKTPLKYGTILIILLSLTIGVALFTTILAIQGRSPVEVLGTLLISFVSPSIVK
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHH
DFIILTMLGYALLVSFKGALWNIGAEGQLFISTIPVIVLTLHVMPNPPSQLHAVTIILLI
HHHHHHHHHHHHHHHHCCHHEECCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IIVSTITGAAWASIAGFIRAYLEIDEVPVTLILNYIAYYVVNILVIGPLKGTRVYGYNRT
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
DEIPSIYRLYVTGLERRFTGNPAVDTFLGFIYEVIYYLPWLVAMIIIMFTAWYLLNKTQI
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
GLRIRILGSNPDYLRSVGVNTRLTLVLALTISGAIVGFTSAFYTLSDLLRLSYPIEGQTA
EEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GYGYLAILVAWLSMLDYKLIPVSAYIVASLRTAGINLQVGGLGGLEQTLLLIGLILAVYT
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
IVRFLRDYEVRVV
HHHHHHHCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]