Click here to switch to the map view.

The map label for this gene is kefA [C]

Identifier: 218883882

GI number: 218883882

Start: 534678

End: 535304

Strand: Direct

Name: kefA [C]

Synonym: DKAM_0571

Alternate gene names: 218883882

Gene position: 534678-535304 (Clockwise)

Preceding gene: 218883881

Following gene: 218883884

Centisome position: 39.16

GC content: 46.41

Gene sequence:

>627_bases
GTGAGTGAGCCAAGTAAGGACTCTATAGGCAGCGCGTTAGCCAGAGTAGTGTTGTATGCTGTGATAGTAGCCATAGTAAT
GGGTATACTCCAATGGTTCTTCACACAAGGGGTGGATTTACTGGTTAAAACCACTAAGCTAGAAGGATTACAGGTCTTGA
AAGACTATGCTACATACATCTACATAATAGTCTTACTAGTACTGGGCTGGATGATAGTCAACTCAGTGGCACAGCTATTC
TACATGATGTTGAAGCCAAGATACGGTGTATCATCAGCTGCAGCCGTGAGGAGCTTGGTTAAAATACTCGGCCTAGGAGG
CCTGCTAGCAGGCATTGCAGGTGGAGTAGCTGGTGGAGCAGCTGGAGTAGCCCTAGGAGGCTTCATAGGCTTAGTCATAG
GCTTCGCTACACAGCAGGTGCTTGGACAGGCTGTTGCCGGGATGTTCATATTATTAGCGAGGCCATTCAAGATCGGGGAT
ATAGTAGATATAGCCGGTGAAAGCGGTGTTGAAGTCAAAGATATATCAACAATGTTCACCATTGTACAGAGGAGCGATGG
AGTTGAAGTACTGATACCGAGTAGCATGATCATTGGGCAGAAGATAGTTATAAGGAAGAGGGCGTGA

Upstream 100 bases:

>100_bases
AAGACGCATCATAAACGTTACCGCGGCTCCCCTGGTCTGGATTACAAGATTTATATTTTTTAAGTTAGAATAATTTTATA
TAATATATTTGGTGGGAAAT

Downstream 100 bases:

>100_bases
GGCCTCTAAACCAATATGGATTTTTTAACGTGGTTACCCGGAGGAAAGCATATCATTCACTCCTAGATTTCAGGACCACC
GGGATAACAAGCATCGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: Small-Conductance Mechanosensitive Channel-Like Protein; Mechanosensitive Ion Channel Protein MscS

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSEPSKDSIGSALARVVLYAVIVAIVMGILQWFFTQGVDLLVKTTKLEGLQVLKDYATYIYIIVLLVLGWMIVNSVAQLF
YMMLKPRYGVSSAAAVRSLVKILGLGGLLAGIAGGVAGGAAGVALGGFIGLVIGFATQQVLGQAVAGMFILLARPFKIGD
IVDIAGESGVEVKDISTMFTIVQRSDGVEVLIPSSMIIGQKIVIRKRA

Sequences:

>Translated_208_residues
MSEPSKDSIGSALARVVLYAVIVAIVMGILQWFFTQGVDLLVKTTKLEGLQVLKDYATYIYIIVLLVLGWMIVNSVAQLF
YMMLKPRYGVSSAAAVRSLVKILGLGGLLAGIAGGVAGGAAGVALGGFIGLVIGFATQQVLGQAVAGMFILLARPFKIGD
IVDIAGESGVEVKDISTMFTIVQRSDGVEVLIPSSMIIGQKIVIRKRA
>Mature_207_residues
SEPSKDSIGSALARVVLYAVIVAIVMGILQWFFTQGVDLLVKTTKLEGLQVLKDYATYIYIIVLLVLGWMIVNSVAQLFY
MMLKPRYGVSSAAAVRSLVKILGLGGLLAGIAGGVAGGAAGVALGGFIGLVIGFATQQVLGQAVAGMFILLARPFKIGDI
VDIAGESGVEVKDISTMFTIVQRSDGVEVLIPSSMIIGQKIVIRKRA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21890; Mature: 21758

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPSKDSIGSALARVVLYAVIVAIVMGILQWFFTQGVDLLVKTTKLEGLQVLKDYATYI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
YIIVLLVLGWMIVNSVAQLFYMMLKPRYGVSSAAAVRSLVKILGLGGLLAGIAGGVAGGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AGVALGGFIGLVIGFATQQVLGQAVAGMFILLARPFKIGDIVDIAGESGVEVKDISTMFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHH
IVQRSDGVEVLIPSSMIIGQKIVIRKRA
HHHCCCCCEEEECCHHHHHHHHHEECCC
>Mature Secondary Structure 
SEPSKDSIGSALARVVLYAVIVAIVMGILQWFFTQGVDLLVKTTKLEGLQVLKDYATYI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
YIIVLLVLGWMIVNSVAQLFYMMLKPRYGVSSAAAVRSLVKILGLGGLLAGIAGGVAGGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AGVALGGFIGLVIGFATQQVLGQAVAGMFILLARPFKIGDIVDIAGESGVEVKDISTMFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHH
IVQRSDGVEVLIPSSMIIGQKIVIRKRA
HHHCCCCCEEEECCHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA