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The map label for this gene is yhdJ [C]

Identifier: 218883796

GI number: 218883796

Start: 452450

End: 453403

Strand: Reverse

Name: yhdJ [C]

Synonym: DKAM_0485

Alternate gene names: 218883796

Gene position: 453403-452450 (Counterclockwise)

Preceding gene: 218883800

Following gene: 218883793

Centisome position: 33.21

GC content: 47.38

Gene sequence:

>954_bases
ATGAGGCTCGTTGACTACAACGAGTATCTGAACTACGTCTCCAAGAGAAACACGGTGATTGTTGAGGGAGAGGAGATAGA
ATTAAAGCCCATTAAGGTTAAGAGGATGATGCCGCTACCCGAGGAACTCCCTGATTCCTCCTCAACAGTATGGAGTTTCC
CTAAGAGGGGTACATGGGCTACTCATAGAGGCGACTACAGGGGTAACTGGCCTCCCCAGGTAGCTAGGTTACTGATTGAA
AGGTATAGTAACCCAGGCGACATAGTGCTAGACCCCATGATCGGCTCTGGCACCACTTGCATAGAGGCTAAGCTCCTCGG
CAGGAACTGCATAGGCGTCGACATAAGCTACGAGGCCGTGATCCTTACTCTCCACAGGCTGTACTGGCTTGAAAAAACCC
TCGAGAACCCGCCGAATGATGCAGGCAGTATAGACTTAGAGAACGCTAGGAGGGCTGTGGTAGAGATCTATCATGGCGAT
GCCAGGAGGCTCAGCAGGGTAAGGGATGAAACAATAGATCTGGTGATTACTCACCCGCCATATTTTAATATAATTAAGTA
TAGCAGTAGAGTTGACGGCGATCTCTCGAGGGCGAGCAGCCTAGAGGAGTATCTTAAATGGTTTAATGAAGCGACTGGGG
AGATCTATAGGGTCTTAAAGCCGGGGGGACATCTTGGAATACTTATAGGGGATACCCGTATCCGTAAATACTATGTGCCA
ATATCCCATCATGTACTGGAGATTCTTTTAAGAAGAGGCTTCATCCTCAGGGAGGAGGTGGTGAAGATACAGCATAAAAT
GAAGACGACAAGAGAGGTATGGTCTAGGCTCAAGGACAGGGATTTTCTACTCATATATCATGAGAAACTCTACGTCATGA
GAAAGCCCAGGAACCAGGAAGAGTATGAGAAGTACAAGTATAGTGCAAACATGGACCTGGATTTATCTAACTAG

Upstream 100 bases:

>100_bases
GAAGGCATGGTATAAGGATTGATCGTTTAAAAGATTATATTCGTTGTTTCAACAAATATATTTCTCGGCCCCATATCTTA
ATACATTGGTAGGGTAATCA

Downstream 100 bases:

>100_bases
TCAATGGGTTTAAACTTGTTTAGGCATGTATTTATCAACTATGAGGCCAGGATTCTCCCTTAACACCTTAACAGCTTTAG
GCAAATACCCCATAATAGTA

Product: DNA adenine modification methylase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: RNA Methylase; DNA Methylase; DNA Methylase N-4/N-6 Domain Protein; DNA Adenine Methylase; Adenine-Specific DNA Methylase; DNA Methylase Domain Protein; Sensor Protein FixL; Site-Specific DNA-Methyltransferase; SufBD Protein

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRLVDYNEYLNYVSKRNTVIVEGEEIELKPIKVKRMMPLPEELPDSSSTVWSFPKRGTWATHRGDYRGNWPPQVARLLIE
RYSNPGDIVLDPMIGSGTTCIEAKLLGRNCIGVDISYEAVILTLHRLYWLEKTLENPPNDAGSIDLENARRAVVEIYHGD
ARRLSRVRDETIDLVITHPPYFNIIKYSSRVDGDLSRASSLEEYLKWFNEATGEIYRVLKPGGHLGILIGDTRIRKYYVP
ISHHVLEILLRRGFILREEVVKIQHKMKTTREVWSRLKDRDFLLIYHEKLYVMRKPRNQEEYEKYKYSANMDLDLSN

Sequences:

>Translated_317_residues
MRLVDYNEYLNYVSKRNTVIVEGEEIELKPIKVKRMMPLPEELPDSSSTVWSFPKRGTWATHRGDYRGNWPPQVARLLIE
RYSNPGDIVLDPMIGSGTTCIEAKLLGRNCIGVDISYEAVILTLHRLYWLEKTLENPPNDAGSIDLENARRAVVEIYHGD
ARRLSRVRDETIDLVITHPPYFNIIKYSSRVDGDLSRASSLEEYLKWFNEATGEIYRVLKPGGHLGILIGDTRIRKYYVP
ISHHVLEILLRRGFILREEVVKIQHKMKTTREVWSRLKDRDFLLIYHEKLYVMRKPRNQEEYEKYKYSANMDLDLSN
>Mature_317_residues
MRLVDYNEYLNYVSKRNTVIVEGEEIELKPIKVKRMMPLPEELPDSSSTVWSFPKRGTWATHRGDYRGNWPPQVARLLIE
RYSNPGDIVLDPMIGSGTTCIEAKLLGRNCIGVDISYEAVILTLHRLYWLEKTLENPPNDAGSIDLENARRAVVEIYHGD
ARRLSRVRDETIDLVITHPPYFNIIKYSSRVDGDLSRASSLEEYLKWFNEATGEIYRVLKPGGHLGILIGDTRIRKYYVP
ISHHVLEILLRRGFILREEVVKIQHKMKTTREVWSRLKDRDFLLIYHEKLYVMRKPRNQEEYEKYKYSANMDLDLSN

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 37125; Mature: 37125

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVDYNEYLNYVSKRNTVIVEGEEIELKPIKVKRMMPLPEELPDSSSTVWSFPKRGTWA
CCEECHHHHHHHHHCCCEEEEECCEEEEEEEEEEECCCCHHHCCCCCCCEECCCCCCCCC
THRGDYRGNWPPQVARLLIERYSNPGDIVLDPMIGSGTTCIEAKLLGRNCIGVDISYEAV
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCCEEEEEECCHHHH
ILTLHRLYWLEKTLENPPNDAGSIDLENARRAVVEIYHGDARRLSRVRDETIDLVITHPP
HHHHHHHHHHHHHHCCCCCCCCCEEHHHHHEEEHHEECCCHHHHHHHHCCCEEEEEECCC
YFNIIKYSSRVDGDLSRASSLEEYLKWFNEATGEIYRVLKPGGHLGILIGDTRIRKYYVP
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECC
ISHHVLEILLRRGFILREEVVKIQHKMKTTREVWSRLKDRDFLLIYHEKLYVMRKPRNQE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHH
EYEKYKYSANMDLDLSN
HHHHHHHCCCCEEEECC
>Mature Secondary Structure
MRLVDYNEYLNYVSKRNTVIVEGEEIELKPIKVKRMMPLPEELPDSSSTVWSFPKRGTWA
CCEECHHHHHHHHHCCCEEEEECCEEEEEEEEEEECCCCHHHCCCCCCCEECCCCCCCCC
THRGDYRGNWPPQVARLLIERYSNPGDIVLDPMIGSGTTCIEAKLLGRNCIGVDISYEAV
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCCEEEEEECCHHHH
ILTLHRLYWLEKTLENPPNDAGSIDLENARRAVVEIYHGDARRLSRVRDETIDLVITHPP
HHHHHHHHHHHHHHCCCCCCCCCEEHHHHHEEEHHEECCCHHHHHHHHCCCEEEEEECCC
YFNIIKYSSRVDGDLSRASSLEEYLKWFNEATGEIYRVLKPGGHLGILIGDTRIRKYYVP
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECC
ISHHVLEILLRRGFILREEVVKIQHKMKTTREVWSRLKDRDFLLIYHEKLYVMRKPRNQE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHH
EYEKYKYSANMDLDLSN
HHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA