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The map label for this gene is argF [H]

Identifier: 218883541

GI number: 218883541

Start: 212524

End: 213588

Strand: Reverse

Name: argF [H]

Synonym: DKAM_0230

Alternate gene names: 218883541

Gene position: 213588-212524 (Counterclockwise)

Preceding gene: 218883547

Following gene: 218883539

Centisome position: 15.64

GC content: 46.67

Gene sequence:

>1065_bases
ATGCCGGCCCTAAGACACCTAGTAAGAGAGTTAAGCGGCAGAGATCTAATATCAACCCTTGACTGGAGCGATGAGGAATT
AGAGATAACGCTTAGACTAGCTAAGGAGTTCAAAGAGATAGCACACTACTATGGTGTAGAGGCATTACCAAAGATCCTAG
AGAGAAAGGTATTCTACATGTTATTCTTCGCACCATCAACGAGGACGAGGGCAGCCTTCGAGTCAGCCATGGTATTCCTA
GGTGGACATGCAGCATTCATTGATGCAACAACGACACGCATGGCCTTCGGGAAGCAGGAGAAAGCCGGCGAAGCCGTTAA
AGATGTCGCAGCTATGTACGATGTCTATGGCCATGGATTAGGGATTAGAATCCTGGATAAAGCCATAGATTACCTATATG
GAGTTGGTAACGCGTATATAAGGGAGATGGCTGACGCAGCAAATATACCAGTAATAAACATGGCTGACGACAAGTTCCAC
CCAACACAGGGGTTAGCCGACATATTCACCTTCAGGGAGAGATTCGGAAACGTGGAAGGCAAAAAGTATGTCATAATGTG
GGCATACAGCCCTGAGATAAGAGGGTGGTGCAGCGTCCAGGAGGACATGATACTGTTCCCACGCTTCGGAGTAGATGTAG
TAGTGGCTAGACCACCAGGTTTCGACCTAGACCCAGAGCTGGTTGAAAAGGCTAAGCAGCTGGCAAGAGAACATGGTAGC
ACAATAGAGTTCACTGATAACCTTGAGGAGGCTGTCAGGGGTGCGCATGCGGTGTTCCCGAGGAACTGGGCTTCCCCACA
ACTAGTCAAGCTCGGATACAGTAAATTCAAGGATGAGGAATTAAAGATATATGAGAAGTATAAGAACTGGAAGGTGACAC
GTAGCCTAATGGACTTGATGGATAAGCATGGCGTATTAATGCACGTCCTCCCAATATTCAGGGGATATGAGGCAGATGAC
GAGGTAATAGACAACCCAAGGAAATCAGTCATATATGAACAAGCAGAGAACGGTTTATGGACGAAGATGGCTGTATTAGC
ATTAACGATGTACGGTGTTAAATAG

Upstream 100 bases:

>100_bases
CCTTCTTAAAAACCTATATCAGCCAGGCGTTTTAAACAAAACCTCGTGAAAATTTATTACCTTAACCAGGTGAAAGTAGT
ATTAAAGGTGAGTCCAACCA

Downstream 100 bases:

>100_bases
CTCCCTGTAGTTTTGGTTAAAGGCTCTCTTTTTCCTATCCTCCCTACTCTTCTAAAATACTCTACTTCATGTATTCATCG
AGATCTACTTCCTTACCATC

Product: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain-containing protein

Products: NA

Alternate protein names: OTCase [H]

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MPALRHLVRELSGRDLISTLDWSDEELEITLRLAKEFKEIAHYYGVEALPKILERKVFYMLFFAPSTRTRAAFESAMVFL
GGHAAFIDATTTRMAFGKQEKAGEAVKDVAAMYDVYGHGLGIRILDKAIDYLYGVGNAYIREMADAANIPVINMADDKFH
PTQGLADIFTFRERFGNVEGKKYVIMWAYSPEIRGWCSVQEDMILFPRFGVDVVVARPPGFDLDPELVEKAKQLAREHGS
TIEFTDNLEEAVRGAHAVFPRNWASPQLVKLGYSKFKDEELKIYEKYKNWKVTRSLMDLMDKHGVLMHVLPIFRGYEADD
EVIDNPRKSVIYEQAENGLWTKMAVLALTMYGVK

Sequences:

>Translated_354_residues
MPALRHLVRELSGRDLISTLDWSDEELEITLRLAKEFKEIAHYYGVEALPKILERKVFYMLFFAPSTRTRAAFESAMVFL
GGHAAFIDATTTRMAFGKQEKAGEAVKDVAAMYDVYGHGLGIRILDKAIDYLYGVGNAYIREMADAANIPVINMADDKFH
PTQGLADIFTFRERFGNVEGKKYVIMWAYSPEIRGWCSVQEDMILFPRFGVDVVVARPPGFDLDPELVEKAKQLAREHGS
TIEFTDNLEEAVRGAHAVFPRNWASPQLVKLGYSKFKDEELKIYEKYKNWKVTRSLMDLMDKHGVLMHVLPIFRGYEADD
EVIDNPRKSVIYEQAENGLWTKMAVLALTMYGVK
>Mature_353_residues
PALRHLVRELSGRDLISTLDWSDEELEITLRLAKEFKEIAHYYGVEALPKILERKVFYMLFFAPSTRTRAAFESAMVFLG
GHAAFIDATTTRMAFGKQEKAGEAVKDVAAMYDVYGHGLGIRILDKAIDYLYGVGNAYIREMADAANIPVINMADDKFHP
TQGLADIFTFRERFGNVEGKKYVIMWAYSPEIRGWCSVQEDMILFPRFGVDVVVARPPGFDLDPELVEKAKQLAREHGST
IEFTDNLEEAVRGAHAVFPRNWASPQLVKLGYSKFKDEELKIYEKYKNWKVTRSLMDLMDKHGVLMHVLPIFRGYEADDE
VIDNPRKSVIYEQAENGLWTKMAVLALTMYGVK

Specific function: Unknown

COG id: COG0078

COG function: function code E; Ornithine carbamoyltransferase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATCase/OTCase family [H]

Homologues:

Organism=Homo sapiens, GI38788445, Length=337, Percent_Identity=28.486646884273, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI18105007, Length=355, Percent_Identity=24.7887323943662, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI48994908, Length=335, Percent_Identity=30.4477611940298, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1790703, Length=359, Percent_Identity=26.1838440111421, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786469, Length=365, Percent_Identity=25.4794520547945, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI2367364, Length=176, Percent_Identity=28.4090909090909, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6322373, Length=348, Percent_Identity=27.8735632183908, Blast_Score=114, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6322331, Length=354, Percent_Identity=23.728813559322, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24642586, Length=355, Percent_Identity=23.943661971831, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006132
- InterPro:   IPR006130
- InterPro:   IPR006131
- InterPro:   IPR002292 [H]

Pfam domain/function: PF00185 OTCace; PF02729 OTCace_N [H]

EC number: =2.1.3.3 [H]

Molecular weight: Translated: 40385; Mature: 40254

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALRHLVRELSGRDLISTLDWSDEELEITLRLAKEFKEIAHYYGVEALPKILERKVFYM
CCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEE
LFFAPSTRTRAAFESAMVFLGGHAAFIDATTTRMAFGKQEKAGEAVKDVAAMYDVYGHGL
EEECCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
GIRILDKAIDYLYGVGNAYIREMADAANIPVINMADDKFHPTQGLADIFTFRERFGNVEG
HHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
KKYVIMWAYSPEIRGWCSVQEDMILFPRFGVDVVVARPPGFDLDPELVEKAKQLAREHGS
CEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
TIEFTDNLEEAVRGAHAVFPRNWASPQLVKLGYSKFKDEELKIYEKYKNWKVTRSLMDLM
EEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHH
DKHGVLMHVLPIFRGYEADDEVIDNPRKSVIYEQAENGLWTKMAVLALTMYGVK
HHCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PALRHLVRELSGRDLISTLDWSDEELEITLRLAKEFKEIAHYYGVEALPKILERKVFYM
CHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEE
LFFAPSTRTRAAFESAMVFLGGHAAFIDATTTRMAFGKQEKAGEAVKDVAAMYDVYGHGL
EEECCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
GIRILDKAIDYLYGVGNAYIREMADAANIPVINMADDKFHPTQGLADIFTFRERFGNVEG
HHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
KKYVIMWAYSPEIRGWCSVQEDMILFPRFGVDVVVARPPGFDLDPELVEKAKQLAREHGS
CEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
TIEFTDNLEEAVRGAHAVFPRNWASPQLVKLGYSKFKDEELKIYEKYKNWKVTRSLMDLM
EEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHH
DKHGVLMHVLPIFRGYEADDEVIDNPRKSVIYEQAENGLWTKMAVLALTMYGVK
HHCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA