Definition Desulfurococcus kamchatkensis 1221n chromosome, complete genome.
Accession NC_011766
Length 1,365,223

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The map label for this gene is 218883510

Identifier: 218883510

GI number: 218883510

Start: 185841

End: 186725

Strand: Reverse

Name: 218883510

Synonym: DKAM_0197

Alternate gene names: NA

Gene position: 186725-185841 (Counterclockwise)

Preceding gene: 218883511

Following gene: 218883507

Centisome position: 13.68

GC content: 46.44

Gene sequence:

>885_bases
ATGGTTAACCCGTTTATCAGGGGAGCTAGGAGATATATCTCAGCAGGGGTTGCAGTATCATACCCCAACAACGTTGTTAT
CGTTAAGGAGGGAAGCGAATTACGCGTCGAGGGCTGCAGATCCGATGAGGTGTTTACCAGAATAAAAGACTTCGCCGTTA
AACATGGTTTAAAAGGAATCATTGAAATAAGGGAATGCATACCCAGACACATAGGACTAGGTTCCACAACGCAACTAGTG
CTCGCAGCTGGATATGGGCTTGCATTAGTGAATAACCACCTGATAGATCCTGTCGAAATAGCTGTTGAGACAGGACTTGG
CAAATACTCCGGTGTTGGAACATATGTGTTTAAACATGGTGGATTCGTGGTTGACATGGGTAGATCCGAGTCCACAGCAT
TCCCGCCCCTCCTAACCAGGCTTGAATTCCCTGAGGAATGGGTTTTCATCATTGCAATACCTTCAGGTAGCGGGCTCGAT
GAGGAGAGGGAAGACAGGATTTTCGCTGAAGAAAACTGGAATATTCCCGTAGAATTAACATGGAAGGCCTCATATCATCT
AATCGAGTTATCCTCAGCTGTGGCTGAAAGGGACTTCGACTCATTCGTGAAGGCGTTGACAGCTTTGCAGGAAACCGTTG
GCTCTATGTTTTCCAGATATCAGGGCGGTGTTTTCTCGGTTAATTCTGCTAGGGTCATTAAGCTACTCAGAGAAAACGGT
GTAGAAGGGGTTGGACAAAGCTCGTGGGGTCCGGCTGTCTATGGGGTTGTAAAAGGATTAGATGAGGCTGAGGCGATCTT
AGAGAATTTGATGCCAAGACTCGACGGGAAGGTATTCATTACTAGACCACGTAATAAAGGGGTCGAGGTTGTGGAGGAAA
AATAA

Upstream 100 bases:

>100_bases
TGGATAGTGCTTACATGGATTTAGCCAATAAGATTAGAAAGGTGGTGGAGGATTGGCTAGGGAAGTAAAGATTAACACAC
CTTCGAGACTGCACTTCGGC

Downstream 100 bases:

>100_bases
CGCTGTAATCTAGTTTATGGCTATAGCTATTCCCTCGCTACGTGGGTCGCCGGCAAGTATTAATTTTTCATCGTCTAGGA
TGGCTACATGTACATGTCCA

Product: GhmP kinase putative ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGIIEIRECIPRHIGLGSTTQLV
LAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHGGFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLD
EEREDRIFAEENWNIPVELTWKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG
VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK

Sequences:

>Translated_294_residues
MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGIIEIRECIPRHIGLGSTTQLV
LAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHGGFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLD
EEREDRIFAEENWNIPVELTWKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG
VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK
>Mature_294_residues
MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGIIEIRECIPRHIGLGSTTQLV
LAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHGGFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLD
EEREDRIFAEENWNIPVELTWKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG
VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK

Specific function: Unknown

COG id: COG1907

COG function: function code R; Predicted archaeal sugar kinases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1427 and A.fulgidus AF2089 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004422
- InterPro:   IPR006204
- InterPro:   IPR013750
- InterPro:   IPR020568
- InterPro:   IPR014721 [H]

Pfam domain/function: PF08544 GHMP_kinases_C; PF00288 GHMP_kinases_N [H]

EC number: NA

Molecular weight: Translated: 32344; Mature: 32344

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGI
CCCHHHHHHHHHHHCCEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
IEIRECIPRHIGLGSTTQLVLAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHG
HHHHHHHHHHCCCCCHHHEEEECCCCCEEHHCCCCCHHHHHHHCCCCCCCCCEEEEEECC
GFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLDEEREDRIFAEENWNIPVELT
CEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHCCEEECCCCCCCEEEE
WKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG
ECCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCC
VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECC
>Mature Secondary Structure
MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGI
CCCHHHHHHHHHHHCCEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
IEIRECIPRHIGLGSTTQLVLAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHG
HHHHHHHHHHCCCCCHHHEEEECCCCCEEHHCCCCCHHHHHHHCCCCCCCCCEEEEEECC
GFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLDEEREDRIFAEENWNIPVELT
CEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHCCEEECCCCCCCEEEE
WKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG
ECCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCC
VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]