| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218883510
Identifier: 218883510
GI number: 218883510
Start: 185841
End: 186725
Strand: Reverse
Name: 218883510
Synonym: DKAM_0197
Alternate gene names: NA
Gene position: 186725-185841 (Counterclockwise)
Preceding gene: 218883511
Following gene: 218883507
Centisome position: 13.68
GC content: 46.44
Gene sequence:
>885_bases ATGGTTAACCCGTTTATCAGGGGAGCTAGGAGATATATCTCAGCAGGGGTTGCAGTATCATACCCCAACAACGTTGTTAT CGTTAAGGAGGGAAGCGAATTACGCGTCGAGGGCTGCAGATCCGATGAGGTGTTTACCAGAATAAAAGACTTCGCCGTTA AACATGGTTTAAAAGGAATCATTGAAATAAGGGAATGCATACCCAGACACATAGGACTAGGTTCCACAACGCAACTAGTG CTCGCAGCTGGATATGGGCTTGCATTAGTGAATAACCACCTGATAGATCCTGTCGAAATAGCTGTTGAGACAGGACTTGG CAAATACTCCGGTGTTGGAACATATGTGTTTAAACATGGTGGATTCGTGGTTGACATGGGTAGATCCGAGTCCACAGCAT TCCCGCCCCTCCTAACCAGGCTTGAATTCCCTGAGGAATGGGTTTTCATCATTGCAATACCTTCAGGTAGCGGGCTCGAT GAGGAGAGGGAAGACAGGATTTTCGCTGAAGAAAACTGGAATATTCCCGTAGAATTAACATGGAAGGCCTCATATCATCT AATCGAGTTATCCTCAGCTGTGGCTGAAAGGGACTTCGACTCATTCGTGAAGGCGTTGACAGCTTTGCAGGAAACCGTTG GCTCTATGTTTTCCAGATATCAGGGCGGTGTTTTCTCGGTTAATTCTGCTAGGGTCATTAAGCTACTCAGAGAAAACGGT GTAGAAGGGGTTGGACAAAGCTCGTGGGGTCCGGCTGTCTATGGGGTTGTAAAAGGATTAGATGAGGCTGAGGCGATCTT AGAGAATTTGATGCCAAGACTCGACGGGAAGGTATTCATTACTAGACCACGTAATAAAGGGGTCGAGGTTGTGGAGGAAA AATAA
Upstream 100 bases:
>100_bases TGGATAGTGCTTACATGGATTTAGCCAATAAGATTAGAAAGGTGGTGGAGGATTGGCTAGGGAAGTAAAGATTAACACAC CTTCGAGACTGCACTTCGGC
Downstream 100 bases:
>100_bases CGCTGTAATCTAGTTTATGGCTATAGCTATTCCCTCGCTACGTGGGTCGCCGGCAAGTATTAATTTTTCATCGTCTAGGA TGGCTACATGTACATGTCCA
Product: GhmP kinase putative ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGIIEIRECIPRHIGLGSTTQLV LAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHGGFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLD EEREDRIFAEENWNIPVELTWKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK
Sequences:
>Translated_294_residues MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGIIEIRECIPRHIGLGSTTQLV LAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHGGFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLD EEREDRIFAEENWNIPVELTWKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK >Mature_294_residues MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGIIEIRECIPRHIGLGSTTQLV LAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHGGFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLD EEREDRIFAEENWNIPVELTWKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK
Specific function: Unknown
COG id: COG1907
COG function: function code R; Predicted archaeal sugar kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1427 and A.fulgidus AF2089 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004422 - InterPro: IPR006204 - InterPro: IPR013750 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF08544 GHMP_kinases_C; PF00288 GHMP_kinases_N [H]
EC number: NA
Molecular weight: Translated: 32344; Mature: 32344
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGI CCCHHHHHHHHHHHCCEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHH IEIRECIPRHIGLGSTTQLVLAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHG HHHHHHHHHHCCCCCHHHEEEECCCCCEEHHCCCCCHHHHHHHCCCCCCCCCEEEEEECC GFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLDEEREDRIFAEENWNIPVELT CEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHCCEEECCCCCCCEEEE WKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG ECCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCC VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECC >Mature Secondary Structure MVNPFIRGARRYISAGVAVSYPNNVVIVKEGSELRVEGCRSDEVFTRIKDFAVKHGLKGI CCCHHHHHHHHHHHCCEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHH IEIRECIPRHIGLGSTTQLVLAAGYGLALVNNHLIDPVEIAVETGLGKYSGVGTYVFKHG HHHHHHHHHHCCCCCHHHEEEECCCCCEEHHCCCCCHHHHHHHCCCCCCCCCEEEEEECC GFVVDMGRSESTAFPPLLTRLEFPEEWVFIIAIPSGSGLDEEREDRIFAEENWNIPVELT CEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHCCEEECCCCCCCEEEE WKASYHLIELSSAVAERDFDSFVKALTALQETVGSMFSRYQGGVFSVNSARVIKLLRENG ECCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCC VEGVGQSSWGPAVYGVVKGLDEAEAILENLMPRLDGKVFITRPRNKGVEVVEEK CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]