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The map label for this gene is hofB [C]

Identifier: 218710400

GI number: 218710400

Start: 2607959

End: 2609413

Strand: Reverse

Name: hofB [C]

Synonym: VS_2437

Alternate gene names: 218710400

Gene position: 2609413-2607959 (Counterclockwise)

Preceding gene: 218710401

Following gene: 218710399

Centisome position: 79.09

GC content: 45.5

Gene sequence:

>1455_bases
GTGATGTTCTTTAAACGAAAAAATGTAAATCCAGAGTTTGAAAAAAGAGTAGAACAGATTTCGCATGATTCAGAAGATGC
CAATCCTGTTGAACGTTTATCAAGCGTTGAGGTGTCTAGCCACTCTCGCAGTGCAGAAGCTCATGTAGAAAAAGAAAAGG
CGATTGATGAGGCTCGGAAAGTTCTCGAACAAGAGCTATCAATTAAACACTTTTTCCATAAGCAGCTCCTTGAAACGTTA
GACTTAGGGTTGCTTTCAAGCTTGGAAAAAGAGCGAGCTAAGCTTGACCTACATGAAGCCATCGTACAATTGATGGCTGA
CGATGGGAGCCATGCACTCAGTGCCGAAGGGCGTAAGCGGGTTATCAAGCAGATAGAAGATGAGGTTTTTGGCCTTGGGC
CGCTTGAGCCTCTATTAGCCGATCAAACGGTCTCCGATATATTAGTCAACGGCCCTAAAAGTGTTTACGTTGAGCGAAGG
GGTAAACTCGAAAAAACGCCATACACTTTTCTGGATGATCGTCATCTGAGAAACATTATCGACCGCATAGTCAGTCAGGT
AGGGCGTCGGATAGATGAAGCATCACCTATGGTAGATGCGCGCTTAGTTGATGGGTCACGTGTTAACGCCATTATCCCTC
CTTTGGCTCTTGATGGTCCTTCCGTTTCAATCCGTCGTTTTGCCGTTGATCGTTTGACGATGGATAACTTGATTAGCTAC
GACTCCGTCTCGCCTCAAATGGCTAAGTTTGTCGAAGCTGCCGTGAAAGGAGAACTTAATATCTTGATTTCAGGAGGGAC
GGGGTCAGGGAAAACAACCACACTGAATATCTTTTCTGGTTTCATCCCTCGAGACCAACGAATCATTACTATAGAAGACT
CTGCAGAGTTACAACTTCAACAACCCCATGTTATTCGCCTAGAAACCCGCCCTGCTAACTTAGAAGGGAAAGGGGAGATT
AGTCAGAGAGAGTTGGTAAAAAACACCTTACGTATGCGACCAGACCGAATTGTGGTTGGTGAGGTGCGTGGTAGCGAAGC
CGTTGATATGTTGGCGGCAATGAATACTGGTCATGATGGGTCTCTTGCGACTATTCACGCCAATACCCCCCGAGATGCCT
TAAGCCGTGTTGAAAACATGTTCTCTATGGCTGGTTGGAACATTTCAACCAAAAACTTAAGAGCCCAAATTGCTTCGGCG
ATCCACCTTGTTGTCCAAATGGAACGACAAGAAGATGGTAAGCGCCGTATGGTGAGTATTCAAGAGATCAACGGCATGGA
GGGGGAGGTGATTACCATGTCGGAAATTTTCCGTTTTCAACGTAAAGGTATTGATGAAGATGGCAATATTATCGGCTATT
TCACTGCGACGGGGATCGTACCTCAATATCATGACCAGTTAGTTAAACGTGGACTCGATCTGCCTTTCGAGCTCTTCACT
GAGACTCATGGTTAA

Upstream 100 bases:

>100_bases
CGATTTGTCACACATTCTTTCACCACCAGAGCAGGAAGAGAAAGGGTGGCTGAAAAAGCTGTTTTCATAATGGGTTGATA
AAAAGTAAACGCGAGGGATT

Downstream 100 bases:

>100_bases
GGAGAGATTATGGATAATGTAAGTGTTTCACTCGGCCTATTATTCATCGCGGTGCTTTTTATCTCCCAAGCTTTGTTACT
GCCTGCTGCGGGGAAAAAAG

Product: Flp pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MMFFKRKNVNPEFEKRVEQISHDSEDANPVERLSSVEVSSHSRSAEAHVEKEKAIDEARKVLEQELSIKHFFHKQLLETL
DLGLLSSLEKERAKLDLHEAIVQLMADDGSHALSAEGRKRVIKQIEDEVFGLGPLEPLLADQTVSDILVNGPKSVYVERR
GKLEKTPYTFLDDRHLRNIIDRIVSQVGRRIDEASPMVDARLVDGSRVNAIIPPLALDGPSVSIRRFAVDRLTMDNLISY
DSVSPQMAKFVEAAVKGELNILISGGTGSGKTTTLNIFSGFIPRDQRIITIEDSAELQLQQPHVIRLETRPANLEGKGEI
SQRELVKNTLRMRPDRIVVGEVRGSEAVDMLAAMNTGHDGSLATIHANTPRDALSRVENMFSMAGWNISTKNLRAQIASA
IHLVVQMERQEDGKRRMVSIQEINGMEGEVITMSEIFRFQRKGIDEDGNIIGYFTATGIVPQYHDQLVKRGLDLPFELFT
ETHG

Sequences:

>Translated_484_residues
MMFFKRKNVNPEFEKRVEQISHDSEDANPVERLSSVEVSSHSRSAEAHVEKEKAIDEARKVLEQELSIKHFFHKQLLETL
DLGLLSSLEKERAKLDLHEAIVQLMADDGSHALSAEGRKRVIKQIEDEVFGLGPLEPLLADQTVSDILVNGPKSVYVERR
GKLEKTPYTFLDDRHLRNIIDRIVSQVGRRIDEASPMVDARLVDGSRVNAIIPPLALDGPSVSIRRFAVDRLTMDNLISY
DSVSPQMAKFVEAAVKGELNILISGGTGSGKTTTLNIFSGFIPRDQRIITIEDSAELQLQQPHVIRLETRPANLEGKGEI
SQRELVKNTLRMRPDRIVVGEVRGSEAVDMLAAMNTGHDGSLATIHANTPRDALSRVENMFSMAGWNISTKNLRAQIASA
IHLVVQMERQEDGKRRMVSIQEINGMEGEVITMSEIFRFQRKGIDEDGNIIGYFTATGIVPQYHDQLVKRGLDLPFELFT
ETHG
>Mature_484_residues
MMFFKRKNVNPEFEKRVEQISHDSEDANPVERLSSVEVSSHSRSAEAHVEKEKAIDEARKVLEQELSIKHFFHKQLLETL
DLGLLSSLEKERAKLDLHEAIVQLMADDGSHALSAEGRKRVIKQIEDEVFGLGPLEPLLADQTVSDILVNGPKSVYVERR
GKLEKTPYTFLDDRHLRNIIDRIVSQVGRRIDEASPMVDARLVDGSRVNAIIPPLALDGPSVSIRRFAVDRLTMDNLISY
DSVSPQMAKFVEAAVKGELNILISGGTGSGKTTTLNIFSGFIPRDQRIITIEDSAELQLQQPHVIRLETRPANLEGKGEI
SQRELVKNTLRMRPDRIVVGEVRGSEAVDMLAAMNTGHDGSLATIHANTPRDALSRVENMFSMAGWNISTKNLRAQIASA
IHLVVQMERQEDGKRRMVSIQEINGMEGEVITMSEIFRFQRKGIDEDGNIIGYFTATGIVPQYHDQLVKRGLDLPFELFT
ETHG

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 54212; Mature: 54212

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFFKRKNVNPEFEKRVEQISHDSEDANPVERLSSVEVSSHSRSAEAHVEKEKAIDEARK
CCEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHH
VLEQELSIKHFFHKQLLETLDLGLLSSLEKERAKLDLHEAIVQLMADDGSHALSAEGRKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
VIKQIEDEVFGLGPLEPLLADQTVSDILVNGPKSVYVERRGKLEKTPYTFLDDRHLRNII
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCCCHHHHHHH
DRIVSQVGRRIDEASPMVDARLVDGSRVNAIIPPLALDGPSVSIRRFAVDRLTMDNLISY
HHHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCEECCCCCCHHHHHHHHHHHHHHHHCC
DSVSPQMAKFVEAAVKGELNILISGGTGSGKTTTLNIFSGFIPRDQRIITIEDSAELQLQ
CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEHHCCCCCCCEEEEEECCCCEEEC
QPHVIRLETRPANLEGKGEISQRELVKNTLRMRPDRIVVGEVRGSEAVDMLAAMNTGHDG
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCC
SLATIHANTPRDALSRVENMFSMAGWNISTKNLRAQIASAIHLVVQMERQEDGKRRMVSI
CEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEH
QEINGMEGEVITMSEIFRFQRKGIDEDGNIIGYFTATGIVPQYHDQLVKRGLDLPFELFT
HHCCCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHC
ETHG
CCCC
>Mature Secondary Structure
MMFFKRKNVNPEFEKRVEQISHDSEDANPVERLSSVEVSSHSRSAEAHVEKEKAIDEARK
CCEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHH
VLEQELSIKHFFHKQLLETLDLGLLSSLEKERAKLDLHEAIVQLMADDGSHALSAEGRKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
VIKQIEDEVFGLGPLEPLLADQTVSDILVNGPKSVYVERRGKLEKTPYTFLDDRHLRNII
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCCCHHHHHHH
DRIVSQVGRRIDEASPMVDARLVDGSRVNAIIPPLALDGPSVSIRRFAVDRLTMDNLISY
HHHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCEECCCCCCHHHHHHHHHHHHHHHHCC
DSVSPQMAKFVEAAVKGELNILISGGTGSGKTTTLNIFSGFIPRDQRIITIEDSAELQLQ
CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEHHCCCCCCCEEEEEECCCCEEEC
QPHVIRLETRPANLEGKGEISQRELVKNTLRMRPDRIVVGEVRGSEAVDMLAAMNTGHDG
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCC
SLATIHANTPRDALSRVENMFSMAGWNISTKNLRAQIASAIHLVVQMERQEDGKRRMVSI
CEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEH
QEINGMEGEVITMSEIFRFQRKGIDEDGNIIGYFTATGIVPQYHDQLVKRGLDLPFELFT
HHCCCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHC
ETHG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]