Click here to switch to the map view.

The map label for this gene is 218710398

Identifier: 218710398

GI number: 218710398

Start: 2606009

End: 2606980

Strand: Reverse

Name: 218710398

Synonym: VS_2435

Alternate gene names: NA

Gene position: 2606980-2606009 (Counterclockwise)

Preceding gene: 218710399

Following gene: 218710397

Centisome position: 79.02

GC content: 41.46

Gene sequence:

>972_bases
ATGGAATTATTAAACATTGAAGTTTGGAAGCAAATGTTAGCGGACTTTGGAGTCAGCTCTCAGATGGTTATCTACGTAAT
GATTTTGCTTACCACCATTTTGTTAACATTGACTCTAGGGTTGTTTATTTTGGGAACCCGATCCCCTTTAGATAAAAAGC
TCAAACAGATATCAGAAACGGGTTCACCCAATAATAGAAAGCCTTATGACTTCTCTAATACGTTGGAGTCGCTGAGTCCT
TTTATTAGTAAAGGTAATAAAAAGGATAATGAAACCTACTCACAAAAGTTGATGCATGCAGGCTTTCATGAAAAAAATGC
GTTATCGGTTTTTTATGCATTGAAAGTGTTATCGAGTTTGGTCGGTATCATCGCGGGCTTTATGGTTTATTACATCTCAT
TCGGTGGTAGCTACAATAATTTATTGATCATGACCTGCGTCTTTCTTGGGACCTTCACTCCCAATATTATCTTGAGCAAG
TTGCAAAAAGAGCGACAGAAGAAAATTAGAAATGGTGTACCAGATGCTCTTGATCTTCTTGTAGTTTGTACGGAATCTGG
TCTAGGCTTTAATGCAGCACTTGGACGAGTTGCTTCTGAGCTTTATGTTTCTCAGCCAGAGTTGGCCGATGAATTGGAGA
CTGTTTTTGCCAAGATACAAGCAGGTGTCACCATGCCAGATGCGCTGAGGCAGTTCATTGACCGGACGGGGCTGGTCGAA
TTAGAGGGGTTGGTCTCTTTGCTTTCTCATGCGTCTAGAATGGGGGGAAGCTTAGCGCAGACTCTTCGTGATTATACGGT
AGATTTTCGAGATAAGCGTCAGCAAGCTGCTGAAGAAATCGCGGCCAAGATACCGACTAAAATGTTGTTCCCTATGCTGT
TGTTTATTTGGCCTTGCTTTTTTATTGTCGCGTTAGGGCCTGGGATCATTATTGTTATTGATGCACTTGGTGCACCAGGA
GTAAGTTTATGA

Upstream 100 bases:

>100_bases
TAATGACCCTCGCGGCGTTTCAATGGTCAGTGTTGGTATCGTACTTTTAGCGATTGGAGCCCTATGGATTAAGCGAATCA
TCAGCATAGAGATTTAACCT

Downstream 100 bases:

>100_bases
TACGAGTGAGTAGATATTTTCTAGCTTTATTAGTGTTCGTTATTCTTGGTTGTGCATCCTCGGATGAGCCGACAAACCAG
TTTGATGCAGAGTTGTATTC

Product: Flp pilus assembly protein TadC

Products: NA

Alternate protein names: Flp Pilus Assembly Protein TadC; Type II Secretion System F Domain Protein; Type II/IV Secretion System Protein TadC Subfamily; Type II Secretion System F Domain-Containing Protein; Flp Pilus Assembly Protein; TadC Protein; Tad Secretion System Secretion Accessory Protein; Type II Secretion System Protein F; Type II Secretion System F Domain; Bacterial Type II Secretion System Protein F Domain; Pilus Assembly Protein; Tight Adherence TadC-Like Transmembrane Protein; Pilus Component Protein; Type II Secretion System; TadC Pilus Assembly Protein; Integral Membrane Protein; TadC Family Type II/IV Secretion System Protein; Type II Secretion System Protein F Subunit; TadC Component Of Type IV Pilus; Type II Secretion System Protein F Domain; Type II Secretion System Protein F Domain Protein; Bipartite Nuclear Localization Signal Containing Protein; Tight Adherence TadC-Related Transmembrane Protein; Secretion System Protein TadC; Tyrosine Phenol-Lyase; Fimbriae-Related Membrane Protein; Pilus Assembly Protein TadC; Putative Tight Adherence TadC-Like Transmembrane Protein; TadC Subunit; Components Of Type IV Pilus TadC; Pilus Assemble Protein; Von Willebrand Factor Type A; Component Of Type IV Pilus; Type II Secretion System Integral Membrane Subunit; Component Of Pilus Protein; Components Of Type IV Pilus

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MELLNIEVWKQMLADFGVSSQMVIYVMILLTTILLTLTLGLFILGTRSPLDKKLKQISETGSPNNRKPYDFSNTLESLSP
FISKGNKKDNETYSQKLMHAGFHEKNALSVFYALKVLSSLVGIIAGFMVYYISFGGSYNNLLIMTCVFLGTFTPNIILSK
LQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFAKIQAGVTMPDALRQFIDRTGLVE
LEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFIVALGPGIIIVIDALGAPG
VSL

Sequences:

>Translated_323_residues
MELLNIEVWKQMLADFGVSSQMVIYVMILLTTILLTLTLGLFILGTRSPLDKKLKQISETGSPNNRKPYDFSNTLESLSP
FISKGNKKDNETYSQKLMHAGFHEKNALSVFYALKVLSSLVGIIAGFMVYYISFGGSYNNLLIMTCVFLGTFTPNIILSK
LQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFAKIQAGVTMPDALRQFIDRTGLVE
LEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFIVALGPGIIIVIDALGAPG
VSL
>Mature_323_residues
MELLNIEVWKQMLADFGVSSQMVIYVMILLTTILLTLTLGLFILGTRSPLDKKLKQISETGSPNNRKPYDFSNTLESLSP
FISKGNKKDNETYSQKLMHAGFHEKNALSVFYALKVLSSLVGIIAGFMVYYISFGGSYNNLLIMTCVFLGTFTPNIILSK
LQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFAKIQAGVTMPDALRQFIDRTGLVE
LEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFIVALGPGIIIVIDALGAPG
VSL

Specific function: Unknown

COG id: COG2064

COG function: function code NU; Flp pilus assembly protein TadC

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35615; Mature: 35615

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLNIEVWKQMLADFGVSSQMVIYVMILLTTILLTLTLGLFILGTRSPLDKKLKQISET
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GSPNNRKPYDFSNTLESLSPFISKGNKKDNETYSQKLMHAGFHEKNALSVFYALKVLSSL
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VGIIAGFMVYYISFGGSYNNLLIMTCVFLGTFTPNIILSKLQKERQKKIRNGVPDALDLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
VVCTESGLGFNAALGRVASELYVSQPELADELETVFAKIQAGVTMPDALRQFIDRTGLVE
HHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
LEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCF
HHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FIVALGPGIIIVIDALGAPGVSL
HHHHHCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MELLNIEVWKQMLADFGVSSQMVIYVMILLTTILLTLTLGLFILGTRSPLDKKLKQISET
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GSPNNRKPYDFSNTLESLSPFISKGNKKDNETYSQKLMHAGFHEKNALSVFYALKVLSSL
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VGIIAGFMVYYISFGGSYNNLLIMTCVFLGTFTPNIILSKLQKERQKKIRNGVPDALDLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
VVCTESGLGFNAALGRVASELYVSQPELADELETVFAKIQAGVTMPDALRQFIDRTGLVE
HHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
LEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCF
HHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FIVALGPGIIIVIDALGAPGVSL
HHHHHCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA