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The map label for this gene is ygdD [C]

Identifier: 218710361

GI number: 218710361

Start: 2567874

End: 2568272

Strand: Reverse

Name: ygdD [C]

Synonym: VS_2397

Alternate gene names: 218710361

Gene position: 2568272-2567874 (Counterclockwise)

Preceding gene: 218710362

Following gene: 218710360

Centisome position: 77.84

GC content: 43.61

Gene sequence:

>399_bases
ATGAGAAGTAAGTATTTACTCACGTTTGCTGGCATCTCTGGCACGGTTGCTGTGATGCTTGGCGCCTTTGCGGCTCACGG
TTTGAAAGCTATCTTGCCTGAGTATCTGCTAGGCGTGTTTGAGACAGGTGTTCAGTACCAATTTATCCATACTCTAGCGA
TATTGGCGTGTGGTGCTCTGCTTCAGATGAAACTTGGCGCTAAATCACAAAAATATTTTTTCATTGCGGCAATTTGCTTT
ATCATCGGCATCCTTTGTTTTAGTGGCAGCCTTTATGGCTTGGCATTGACAGGAATAAAATGGTTTGGCCCTATAACACC
GTTTGGTGGTCTACTATTTATCATTGGTTGGGGAGTCTTCTCCTTCGCTGCTTTGAATATAAAAGAGGTAACTCAGTGA

Upstream 100 bases:

>100_bases
GACCACAGCTTTAAACCTCGTAAGAGTTCTGGTTACACCGAGCAGCAGAATATTGCGTTAACCGTTGAGAAACTAGCGGC
GTTTATTAAAGAGGTACTCA

Downstream 100 bases:

>100_bases
AACACGTACTACTTTATTGTCGCTCTGGTTTTGAAAAAGAATGTGCTGGCGAAATTCAAGACAAGGCAACACAACTGGAA
GTGTTTGGTTTTCCTCGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MRSKYLLTFAGISGTVAVMLGAFAAHGLKAILPEYLLGVFETGVQYQFIHTLAILACGALLQMKLGAKSQKYFFIAAICF
IIGILCFSGSLYGLALTGIKWFGPITPFGGLLFIIGWGVFSFAALNIKEVTQ

Sequences:

>Translated_132_residues
MRSKYLLTFAGISGTVAVMLGAFAAHGLKAILPEYLLGVFETGVQYQFIHTLAILACGALLQMKLGAKSQKYFFIAAICF
IIGILCFSGSLYGLALTGIKWFGPITPFGGLLFIIGWGVFSFAALNIKEVTQ
>Mature_132_residues
MRSKYLLTFAGISGTVAVMLGAFAAHGLKAILPEYLLGVFETGVQYQFIHTLAILACGALLQMKLGAKSQKYFFIAAICF
IIGILCFSGSLYGLALTGIKWFGPITPFGGLLFIIGWGVFSFAALNIKEVTQ

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=129, Percent_Identity=37.2093023255814, Blast_Score=86, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI193203406, Length=114, Percent_Identity=32.4561403508772, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14179; Mature: 14179

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKYLLTFAGISGTVAVMLGAFAAHGLKAILPEYLLGVFETGVQYQFIHTLAILACGAL
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LQMKLGAKSQKYFFIAAICFIIGILCFSGSLYGLALTGIKWFGPITPFGGLLFIIGWGVF
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SFAALNIKEVTQ
HHHHHHHHHHCC
>Mature Secondary Structure
MRSKYLLTFAGISGTVAVMLGAFAAHGLKAILPEYLLGVFETGVQYQFIHTLAILACGAL
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LQMKLGAKSQKYFFIAAICFIIGILCFSGSLYGLALTGIKWFGPITPFGGLLFIIGWGVF
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SFAALNIKEVTQ
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]