Click here to switch to the map view.

The map label for this gene is rpmE2

Identifier: 218710330

GI number: 218710330

Start: 2534310

End: 2534570

Strand: Reverse

Name: rpmE2

Synonym: VS_2366

Alternate gene names: 218710330

Gene position: 2534570-2534310 (Counterclockwise)

Preceding gene: 218710337

Following gene: 218710329

Centisome position: 76.82

GC content: 44.83

Gene sequence:

>261_bases
ATGAAACCGAATATCCACCCTGATTACCGCCCCGTGGTTTTTCATGACACCAGTGTCGATGAGTACTTCTTAATCGGATC
TACATTGAAAACAGATCGCACTATCGAATGGGAAGACGGAAATACTTATCCTTACTTCACGATTGAGGTGTCGTCAAAGT
CGCATCCTTTCTATACGGGTAAACAGCGAGTGCTACATAAAGAGGGACGCGTTGCGAACTTCACTCGTCGTTTTGGTCAA
TTAGGTAAGGGAGCGAAATAG

Upstream 100 bases:

>100_bases
TAAGACGGAAAAATATCATAAAATCACTTGTTTTTCTTTTGATAATAATTATCATTTGATATGTTATAACGTATCAAATT
AGCCATTTAAGGGAAATACA

Downstream 100 bases:

>100_bases
AATGAAAGTTGTGAAATCACTGAAAAGTGCGAAAAGCCGTCACCCAGATTGCCAAATAGTAAAGCGTAGAGGCCGTCTCT
ATGTCATCTGTAAATCCAAC

Product: 50S ribosomal protein L31 type B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MKPNIHPDYRPVVFHDTSVDEYFLIGSTLKTDRTIEWEDGNTYPYFTIEVSSKSHPFYTGKQRVLHKEGRVANFTRRFGQ
LGKGAK

Sequences:

>Translated_86_residues
MKPNIHPDYRPVVFHDTSVDEYFLIGSTLKTDRTIEWEDGNTYPYFTIEVSSKSHPFYTGKQRVLHKEGRVANFTRRFGQ
LGKGAK
>Mature_86_residues
MKPNIHPDYRPVVFHDTSVDEYFLIGSTLKTDRTIEWEDGNTYPYFTIEVSSKSHPFYTGKQRVLHKEGRVANFTRRFGQ
LGKGAK

Specific function: Unknown

COG id: COG0254

COG function: function code J; Ribosomal protein L31

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily

Homologues:

Organism=Escherichia coli, GI2367109, Length=81, Percent_Identity=75.3086419753086, Blast_Score=124, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL31B_VIBSL (B7VIT0)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002417951.1
- ProteinModelPortal:   B7VIT0
- SMR:   B7VIT0
- GeneID:   7161904
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_2366
- HOGENOM:   HBG610087
- OMA:   YRTVLFH
- ProtClustDB:   PRK01678
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00502
- InterPro:   IPR002150
- PRINTS:   PR01249
- TIGRFAMs:   TIGR00105

Pfam domain/function: PF01197 Ribosomal_L31

EC number: NA

Molecular weight: Translated: 10008; Mature: 10008

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPNIHPDYRPVVFHDTSVDEYFLIGSTLKTDRTIEWEDGNTYPYFTIEVSSKSHPFYTG
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCEEEEEECCCCCCEECC
KQRVLHKEGRVANFTRRFGQLGKGAK
CCEEECCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MKPNIHPDYRPVVFHDTSVDEYFLIGSTLKTDRTIEWEDGNTYPYFTIEVSSKSHPFYTG
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCEEEEEECCCCCCEECC
KQRVLHKEGRVANFTRRFGQLGKGAK
CCEEECCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA