| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709366
Identifier: 218709366
GI number: 218709366
Start: 1484394
End: 1485551
Strand: Direct
Name: 218709366
Synonym: VS_1375
Alternate gene names: NA
Gene position: 1484394-1485551 (Clockwise)
Preceding gene: 218709365
Following gene: 218709367
Centisome position: 44.99
GC content: 42.06
Gene sequence:
>1158_bases GTGAATAATATGAAAAACATACTTCTTTCAACCACAGGCGCCAGTCCTCAGGTATTGACAGAAACGCTTTTTGCCATAGC AAAGAGCGGACGACCATTTCCAGATGAAGTGTACGTCATCACCACACGAAGCAGTAAAGATGTTTTGCTCAATGGCCTAA TTCGAGACGGTCATTTAGAAGCGCTAAAAAACGAATATCAACTACCTGAGTTCGCCTTTGATGAAAGCCATGTTTGGTTG ATAGAAAATGATAAAGGCGAGGGTATCGAAGACGCAAAGTCTATTGAAGACCAAACCTTTATGGCCGATTTCATTACCAA AAAAGTATTCGAGCTTACTCTGCACGATAACACCGCAATCCATGCGTCACTCGCTGGTGGAAGAAAAACCATGGCATTCT ATTTTGGTTATGCGATGTCGATGTTTGGGCGCTCACAGGACATCTTGAGCCACGTATTTGTCGATGATACTTACGAGTTT GTCAGAGACTTTTGGTATCCTACTAAGAATCAAAAATGGGTTTCTGGTAAAAACGGCCAAGGTGAAGTCGACGTAAGTCA GGCAACGGTTACATTGGCAGAAATTCCATTTGTTCGGATGCGAAATGCTGTTGACCCAACTTTGCTATCCACTTTGGCTA ATCTTTCTTTTAGTCAAACGGTGGGTATGTTGAACTCCTCTCATGAAGGAGAGCTGTCCGTCATCATCGATGGCTCGTCC AAATTGATTTCCACGCTTGGTATAGATATCTCGTTGACCGCCAAAGAGCTGGCGTTCTATCTTTGGTTGTTAGACAAAGG TAAGCAAGGCTTACTTGTTGAACGATACTTTGAAGAACAACAAAAGCACAGCATCGACTTCCTTAACACTTACTGCGAGT TTGCACGTGATCCAAGGGTATTTAGCACTTTTGGAACTACACCAGAAGATTTTGAAAACAGTGATTACTCTGCCTTATCA GGAATGAGCAAAGACTTTCTCCAACCTATTTGTTCGACTATAAATCGTAAGCTTAAGAAAGCCTTACCAGCTCAAACAGC TGGTATGCTAGAGGTAATGTCGAGTTCTGAAGGTGTAAACCAGCGCTATTCAGTAGCACTTTGTCGTTCAGATATCGAAG TGTCTATTACTAACAAGCATTTTGAATCAGAGGTTTAA
Upstream 100 bases:
>100_bases CGAGAGTTAACTAATTGATGACCTTGGTAACAATTTATTGCTGGCCTATTAAATATTGTGGAAAATATAGAGGCCAAGAG TAGAGCAAATTTTCATTTGA
Downstream 100 bases:
>100_bases AGGAAAGTTACTATGGCTAAATCAAACTTCGAATTCCTCAAAGGCATTAACGATTTCTTGTACGCTATTGCTCGCGCAGC AGAAAAAAACTATCCAGATG
Product: hypothetical protein
Products: NA
Alternate protein names: Cytoplasmic Protein
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MNNMKNILLSTTGASPQVLTETLFAIAKSGRPFPDEVYVITTRSSKDVLLNGLIRDGHLEALKNEYQLPEFAFDESHVWL IENDKGEGIEDAKSIEDQTFMADFITKKVFELTLHDNTAIHASLAGGRKTMAFYFGYAMSMFGRSQDILSHVFVDDTYEF VRDFWYPTKNQKWVSGKNGQGEVDVSQATVTLAEIPFVRMRNAVDPTLLSTLANLSFSQTVGMLNSSHEGELSVIIDGSS KLISTLGIDISLTAKELAFYLWLLDKGKQGLLVERYFEEQQKHSIDFLNTYCEFARDPRVFSTFGTTPEDFENSDYSALS GMSKDFLQPICSTINRKLKKALPAQTAGMLEVMSSSEGVNQRYSVALCRSDIEVSITNKHFESEV
Sequences:
>Translated_385_residues MNNMKNILLSTTGASPQVLTETLFAIAKSGRPFPDEVYVITTRSSKDVLLNGLIRDGHLEALKNEYQLPEFAFDESHVWL IENDKGEGIEDAKSIEDQTFMADFITKKVFELTLHDNTAIHASLAGGRKTMAFYFGYAMSMFGRSQDILSHVFVDDTYEF VRDFWYPTKNQKWVSGKNGQGEVDVSQATVTLAEIPFVRMRNAVDPTLLSTLANLSFSQTVGMLNSSHEGELSVIIDGSS KLISTLGIDISLTAKELAFYLWLLDKGKQGLLVERYFEEQQKHSIDFLNTYCEFARDPRVFSTFGTTPEDFENSDYSALS GMSKDFLQPICSTINRKLKKALPAQTAGMLEVMSSSEGVNQRYSVALCRSDIEVSITNKHFESEV >Mature_385_residues MNNMKNILLSTTGASPQVLTETLFAIAKSGRPFPDEVYVITTRSSKDVLLNGLIRDGHLEALKNEYQLPEFAFDESHVWL IENDKGEGIEDAKSIEDQTFMADFITKKVFELTLHDNTAIHASLAGGRKTMAFYFGYAMSMFGRSQDILSHVFVDDTYEF VRDFWYPTKNQKWVSGKNGQGEVDVSQATVTLAEIPFVRMRNAVDPTLLSTLANLSFSQTVGMLNSSHEGELSVIIDGSS KLISTLGIDISLTAKELAFYLWLLDKGKQGLLVERYFEEQQKHSIDFLNTYCEFARDPRVFSTFGTTPEDFENSDYSALS GMSKDFLQPICSTINRKLKKALPAQTAGMLEVMSSSEGVNQRYSVALCRSDIEVSITNKHFESEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43151; Mature: 43151
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNMKNILLSTTGASPQVLTETLFAIAKSGRPFPDEVYVITTRSSKDVLLNGLIRDGHLE CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCHHH ALKNEYQLPEFAFDESHVWLIENDKGEGIEDAKSIEDQTFMADFITKKVFELTLHDNTAI HHHHHCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCEE HASLAGGRKTMAFYFGYAMSMFGRSQDILSHVFVDDTYEFVRDFWYPTKNQKWVSGKNGQ EEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCCCC GEVDVSQATVTLAEIPFVRMRNAVDPTLLSTLANLSFSQTVGMLNSSHEGELSVIIDGSS CCEEHHHHEEEHHHCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCH KLISTLGIDISLTAKELAFYLWLLDKGKQGLLVERYFEEQQKHSIDFLNTYCEFARDPRV HHHHHHCCCEEEEHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE FSTFGTTPEDFENSDYSALSGMSKDFLQPICSTINRKLKKALPAQTAGMLEVMSSSEGVN EEECCCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC QRYSVALCRSDIEVSITNKHFESEV CCEEEEEECCCCEEEEECCCCCCCC >Mature Secondary Structure MNNMKNILLSTTGASPQVLTETLFAIAKSGRPFPDEVYVITTRSSKDVLLNGLIRDGHLE CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCHHH ALKNEYQLPEFAFDESHVWLIENDKGEGIEDAKSIEDQTFMADFITKKVFELTLHDNTAI HHHHHCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCEE HASLAGGRKTMAFYFGYAMSMFGRSQDILSHVFVDDTYEFVRDFWYPTKNQKWVSGKNGQ EEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCCCC GEVDVSQATVTLAEIPFVRMRNAVDPTLLSTLANLSFSQTVGMLNSSHEGELSVIIDGSS CCEEHHHHEEEHHHCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCH KLISTLGIDISLTAKELAFYLWLLDKGKQGLLVERYFEEQQKHSIDFLNTYCEFARDPRV HHHHHHCCCEEEEHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE FSTFGTTPEDFENSDYSALSGMSKDFLQPICSTINRKLKKALPAQTAGMLEVMSSSEGVN EEECCCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC QRYSVALCRSDIEVSITNKHFESEV CCEEEEEECCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA