Click here to switch to the map view.

The map label for this gene is ygcF [H]

Identifier: 218709344

GI number: 218709344

Start: 1465170

End: 1465838

Strand: Direct

Name: ygcF [H]

Synonym: VS_1353

Alternate gene names: 218709344

Gene position: 1465170-1465838 (Clockwise)

Preceding gene: 218709342

Following gene: 218709345

Centisome position: 44.41

GC content: 46.04

Gene sequence:

>669_bases
TTGTACAAGATTAATGAAATGTTTGAAACCATCCAGGGTGAGGGCGTATTTACCGGCGTTCCCGCTGTTTTTGTTCGACT
GCAAATTTGCCCTGTAGGCTGTTCTTGGTGTGATACCAAACAGACTTGGGAAGCGTTGCCGGAAGATGAAACCAGCCTTG
GCGATATTATGGTTAAGACAGAGGATTCACCGACTTGGACTGCAATTGATGCGCAGGGAATCGTGAATGAATATATCAAG
CAAGGTTACACCGCGAAGCACATTGTGATTACCGGTGGTGAGCCGTGCATCTATGATCTTGTCCCTCTTACTGAAGCATT
TGAGCAGCACGGTTGTCGTTGTCAGATTGAGACCAGCGGAACATCGGAAGTAAAAGCCACACCAGACACTTGGGTTACGG
TGTCACCAAAAGTCTCAATGAAAGCCAAGTTGGATATCCTTGATAGCGCACTCGTTCGTGCGAATGAAATCAAACACCCT
GTTGGTACAGGTAAAGACATCGAGCAACTAGATGCTCTTATTGCTAGAGCCGATGTCCCTGAAAATACAGTCATTGCGCT
TCAGCCGATTAGCCAAAAAGAACGCGCAACTCAGCTTTGTATTGATACCTGCATTGAGCGCAATTGGCGCTTATCAATCC
AAACTCACAAATATTTGAGCATCGCATAG

Upstream 100 bases:

>100_bases
ATCAACTCATTTATCAGTACTCATTTGTTTGACCAAAAGGGGCAAGTGCTTTAAGGTCTGCGGTTGATTAATTTCATCAA
ATGATTGAGCTGAGGGAAAG

Downstream 100 bases:

>100_bases
GTTGTATTTGTTTACTTGCCTATATAAGTCGCTAGTAGAAGATTCTCGTAAGGATTTAAGATGAAAAAAGCAGTTGTAGT
ATTCAGTGGTGGTCAAGACT

Product: organic radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MYKINEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEALPEDETSLGDIMVKTEDSPTWTAIDAQGIVNEYIK
QGYTAKHIVITGGEPCIYDLVPLTEAFEQHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHP
VGTGKDIEQLDALIARADVPENTVIALQPISQKERATQLCIDTCIERNWRLSIQTHKYLSIA

Sequences:

>Translated_222_residues
MYKINEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEALPEDETSLGDIMVKTEDSPTWTAIDAQGIVNEYIK
QGYTAKHIVITGGEPCIYDLVPLTEAFEQHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHP
VGTGKDIEQLDALIARADVPENTVIALQPISQKERATQLCIDTCIERNWRLSIQTHKYLSIA
>Mature_222_residues
MYKINEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEALPEDETSLGDIMVKTEDSPTWTAIDAQGIVNEYIK
QGYTAKHIVITGGEPCIYDLVPLTEAFEQHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHP
VGTGKDIEQLDALIARADVPENTVIALQPISQKERATQLCIDTCIERNWRLSIQTHKYLSIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=221, Percent_Identity=62.89592760181, Blast_Score=298, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24614; Mature: 24614

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKINEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEALPEDETSLGDIMVKT
CCCHHHHHHHHCCCCEEECCHHEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEE
EDSPTWTAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEQHGCRCQIETSG
CCCCCEEEEEHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHCCCEEEEECCC
TSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHPVGTGKDIEQLDALIARADVP
CCCEEECCCCEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
ENTVIALQPISQKERATQLCIDTCIERNWRLSIQTHKYLSIA
CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEEC
>Mature Secondary Structure
MYKINEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEALPEDETSLGDIMVKT
CCCHHHHHHHHCCCCEEECCHHEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEE
EDSPTWTAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEQHGCRCQIETSG
CCCCCEEEEEHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHCCCEEEEECCC
TSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHPVGTGKDIEQLDALIARADVP
CCCEEECCCCEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
ENTVIALQPISQKERATQLCIDTCIERNWRLSIQTHKYLSIA
CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]