| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218709305
Identifier: 218709305
GI number: 218709305
Start: 1413236
End: 1413598
Strand: Direct
Name: 218709305
Synonym: VS_1314
Alternate gene names: NA
Gene position: 1413236-1413598 (Clockwise)
Preceding gene: 218709299
Following gene: 218709330
Centisome position: 42.83
GC content: 42.98
Gene sequence:
>363_bases ATGGCTTTACCGCCACCACCACCAGACAAGTTTTGGAAAGAGACATTTTCTACGATGTCGGATTTAACTAATACATCACC CGTACCACGAGCCGTCATATCCCAACCGCCACCAGCGCCGCCAGGGATTAGGAAGTGGATTTTTTCTACGTCAGCAGCAA AAGTGTTAAAAGAAAAGGTTGCTGCGATGATAGAAGCCGCAAGAGTAGGTTTCAGTGCCTTGAACATGGTTCACGTTCCT TATGTAGGGGATCTCTTCAATGGAGAGAAACTTATGTTTTATATCCAGCTACTAATTACACGAATAGGGTGTTGGTTAGT AGATGACGTTAAAGTTAACGATGTGTTAATGAATTGTCTGTAA
Upstream 100 bases:
>100_bases AGATTGTGGGAAGATCCCCGTTAGTGAACGAACAACGATAGGCGTTGAGTTCACCATTAGCGTGTCTTCTTGACGTTGAG CCGTCTCGATTAGGTGTGCA
Downstream 100 bases:
>100_bases TGCGGTGATATTGAGGATAAAGAACATTGGGTGAATAAAGTTCATAAAGTTCACGGGGAGGTGAGGATGTCCTTACTGTT GGAGATAGATGAAAAAAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 120; Mature: 119
Protein sequence:
>120_residues MALPPPPPDKFWKETFSTMSDLTNTSPVPRAVISQPPPAPPGIRKWIFSTSAAKVLKEKVAAMIEAARVGFSALNMVHVP YVGDLFNGEKLMFYIQLLITRIGCWLVDDVKVNDVLMNCL
Sequences:
>Translated_120_residues MALPPPPPDKFWKETFSTMSDLTNTSPVPRAVISQPPPAPPGIRKWIFSTSAAKVLKEKVAAMIEAARVGFSALNMVHVP YVGDLFNGEKLMFYIQLLITRIGCWLVDDVKVNDVLMNCL >Mature_119_residues ALPPPPPDKFWKETFSTMSDLTNTSPVPRAVISQPPPAPPGIRKWIFSTSAAKVLKEKVAAMIEAARVGFSALNMVHVPY VGDLFNGEKLMFYIQLLITRIGCWLVDDVKVNDVLMNCL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13302; Mature: 13171
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPPPPPDKFWKETFSTMSDLTNTSPVPRAVISQPPPAPPGIRKWIFSTSAAKVLKEKV CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH AAMIEAARVGFSALNMVHVPYVGDLFNGEKLMFYIQLLITRIGCWLVDDVKVNDVLMNCL HHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC >Mature Secondary Structure ALPPPPPDKFWKETFSTMSDLTNTSPVPRAVISQPPPAPPGIRKWIFSTSAAKVLKEKV CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH AAMIEAARVGFSALNMVHVPYVGDLFNGEKLMFYIQLLITRIGCWLVDDVKVNDVLMNCL HHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA