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The map label for this gene is glpM [H]

Identifier: 218709191

GI number: 218709191

Start: 1270882

End: 1271223

Strand: Direct

Name: glpM [H]

Synonym: VS_1198

Alternate gene names: 218709191

Gene position: 1270882-1271223 (Clockwise)

Preceding gene: 218709190

Following gene: 218709193

Centisome position: 38.52

GC content: 47.66

Gene sequence:

>342_bases
TTGTTCTTTAAATGCCTGCTTGGTGCGGCGGCTGTTTTGTTGATTGCGCTGCTGTCGAAAAGTAAAAGCTTTTACATCGC
AGGTTTAGTGCCGTTGTTTCCAACTTTTGCTCTGATTGCTCACTACATTGTTGGCACGGAACAAACCATGGTGGAGTTAC
GTACCACAGCGTTGTTTGGTCTGTTTTCGCTTGTGCCGTACGCCGCTTATCTTGGCGCAGTGTACGTGTTCAGTTATCGC
TATAACTTGGTATCGACACTCTCGTTAGCGACCATAGTGTGGGTACTGTGTGCTTCGATGCTGCTGTTAGGTTGGACTCG
TTTGGTGCAAAGTTTGGCGTGA

Upstream 100 bases:

>100_bases
ACGTGCATATGTGACGTGTGGCGTTTTTATGGGCGCTATATGAGTTTACTCTCTAGTGCCTTTGTTGATTTGCTTGGATA
ACGTATAAAAAATGATTTCA

Downstream 100 bases:

>100_bases
AAGCTAAATCTTAGAACGGCAATGAGTGCTTGGTGGCAAGTTGATACAAAAAAGGTGGCGCGGGGCCACCAAAAGGGAAA
AGCGTTTCTTGTTTGTATGT

Product: membrane protein GlpM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MFFKCLLGAAAVLLIALLSKSKSFYIAGLVPLFPTFALIAHYIVGTEQTMVELRTTALFGLFSLVPYAAYLGAVYVFSYR
YNLVSTLSLATIVWVLCASMLLLGWTRLVQSLA

Sequences:

>Translated_113_residues
MFFKCLLGAAAVLLIALLSKSKSFYIAGLVPLFPTFALIAHYIVGTEQTMVELRTTALFGLFSLVPYAAYLGAVYVFSYR
YNLVSTLSLATIVWVLCASMLLLGWTRLVQSLA
>Mature_113_residues
MFFKCLLGAAAVLLIALLSKSKSFYIAGLVPLFPTFALIAHYIVGTEQTMVELRTTALFGLFSLVPYAAYLGAVYVFSYR
YNLVSTLSLATIVWVLCASMLLLGWTRLVQSLA

Specific function: Could play a role in alginate biosynthesis. Overexpression may be lethal [H]

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydgC [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=105, Percent_Identity=44.7619047619048, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 12409; Mature: 12409

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFKCLLGAAAVLLIALLSKSKSFYIAGLVPLFPTFALIAHYIVGTEQTMVELRTTALFG
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LFSLVPYAAYLGAVYVFSYRYNLVSTLSLATIVWVLCASMLLLGWTRLVQSLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFFKCLLGAAAVLLIALLSKSKSFYIAGLVPLFPTFALIAHYIVGTEQTMVELRTTALFG
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LFSLVPYAAYLGAVYVFSYRYNLVSTLSLATIVWVLCASMLLLGWTRLVQSLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7642508; 10984043 [H]