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The map label for this gene is ybgC [H]

Identifier: 218709106

GI number: 218709106

Start: 1177348

End: 1177767

Strand: Direct

Name: ybgC [H]

Synonym: VS_1112

Alternate gene names: 218709106

Gene position: 1177348-1177767 (Clockwise)

Preceding gene: 218709105

Following gene: 218709107

Centisome position: 35.68

GC content: 41.43

Gene sequence:

>420_bases
TTGCAGGGATTATCTAAGCCATTTACGTGGCCAGTGACAGTGTATTACGAAGACACCGATGCAGGTGGTGTTGTATACCA
TTCAAACTATCTTAAGTTTTTCGAACGCGCTCGAACTGAGATGTTGCGCTCAATTGGCGTCTCTCAGCAAGTCTTGTTAG
AACAAAATATCGGTTTTGTAGTCCGACATATGGACATCGATTTTATTCAAGGTGCGCGCCTTGATGATTCTTTACAAGTC
ATTACAAATGTTTACGAGTTGAAGCGAGCTACCTTGGTCTTCTGTCAAGAGATCGTAAATCCTGATGGCAAAGCATTGTG
TAAAGCAATGGTTAAGGTAGCATGTATCGACAATCAAAAAATGAAACCCAAAGCAATGCCAACATTTATTCTCACGGAGC
TAACGAATAGTGACTGCTGA

Upstream 100 bases:

>100_bases
TTTTTCGTCTCTTAAATCAAAAAATTCACAGCGATATACTATTAATGATAAGGAGTTAGGTTATAGTGAGATCTTTATCG
TTTTGAATTGTGGTATCAAA

Downstream 100 bases:

>100_bases
AATCTCAATCTTAGGCCTAATTTTAGAAGCTAGCTTACTAGTTAAGATGGTCATGCTAATTCTCATGGGCATGTCTGTTG
TTTCTTGGGCGATGATCATC

Product: hypothetical protein

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MQGLSKPFTWPVTVYYEDTDAGGVVYHSNYLKFFERARTEMLRSIGVSQQVLLEQNIGFVVRHMDIDFIQGARLDDSLQV
ITNVYELKRATLVFCQEIVNPDGKALCKAMVKVACIDNQKMKPKAMPTFILTELTNSDC

Sequences:

>Translated_139_residues
MQGLSKPFTWPVTVYYEDTDAGGVVYHSNYLKFFERARTEMLRSIGVSQQVLLEQNIGFVVRHMDIDFIQGARLDDSLQV
ITNVYELKRATLVFCQEIVNPDGKALCKAMVKVACIDNQKMKPKAMPTFILTELTNSDC
>Mature_139_residues
MQGLSKPFTWPVTVYYEDTDAGGVVYHSNYLKFFERARTEMLRSIGVSQQVLLEQNIGFVVRHMDIDFIQGARLDDSLQV
ITNVYELKRATLVFCQEIVNPDGKALCKAMVKVACIDNQKMKPKAMPTFILTELTNSDC

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=127, Percent_Identity=51.9685039370079, Blast_Score=145, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15802; Mature: 15802

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGLSKPFTWPVTVYYEDTDAGGVVYHSNYLKFFERARTEMLRSIGVSQQVLLEQNIGFV
CCCCCCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEE
VRHMDIDFIQGARLDDSLQVITNVYELKRATLVFCQEIVNPDGKALCKAMVKVACIDNQK
EEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
MKPKAMPTFILTELTNSDC
CCCCCCCHHHEEECCCCCC
>Mature Secondary Structure
MQGLSKPFTWPVTVYYEDTDAGGVVYHSNYLKFFERARTEMLRSIGVSQQVLLEQNIGFV
CCCCCCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEE
VRHMDIDFIQGARLDDSLQVITNVYELKRATLVFCQEIVNPDGKALCKAMVKVACIDNQK
EEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
MKPKAMPTFILTELTNSDC
CCCCCCCHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]