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The map label for this gene is fliR [H]

Identifier: 218708835

GI number: 218708835

Start: 855925

End: 856707

Strand: Direct

Name: fliR [H]

Synonym: VS_0835

Alternate gene names: 218708835

Gene position: 855925-856707 (Clockwise)

Preceding gene: 218708834

Following gene: 218708836

Centisome position: 25.94

GC content: 45.72

Gene sequence:

>783_bases
ATGGAATACCCAACGAGCCTTGTACTAGAGTGGTTAGCCAATTATTTTTGGCCCTACACTCGCATCTCAGCCATGCTGAT
GGTGATGACAGTAACCGGTGCACGCTTTGTGTCGCCGCGTATTCGTCTGTATTTAGGTTTAGCGATCACCTTTGCGGTGA
TGCCTGCGATCCCCGCTGTTCCTAAAGAGATTGAACTGCTCTCTTTCCAAGGTTTCTTGACTGTATTTGAACAAATCGTG
ATTGGCGTTGCCATGGGGTTTGTCACCCAATTTATGATTCAAACTTTCGTAATGCTCGGCCAGATCTTGGGTATGCAATC
AAGCTTGGGTTTCGCCTCTATGGTGGATCCGGCTAACGGGCAAAACACGCCAGTACTGGGCCAATTGTTTATGTTGCTAG
CGACCATGTTTTTTTTGGAGACTGACGGTCACCTGAAAATGCTGCAGCTGGTGGTGTTCAGCTTTAAGACTTTACCCATT
GGCAGTGGAAGTTTGACCTCTGTTGATTATAGAGAGCTTGCTCTGTGGTTGGGTATCATGTTCAAAACAGCATTAGCAAT
GTCATTGTCTGGTATTATTGCGCTGCTGACGATTAACCTTTCGTTTGGTGTAATGACGCGTGCGGCGCCTCAACTAAATA
TCTTTTCTTTGGGTTTCTCATTTGCGCTACTCGTGGGCCTATTGCTTTGTTGGTATATCCTTGGCGGCTTGTTTAGTCAC
TATGAGTTATTCTGGATACAAACCGAACAACAGATATGTCGTCTAATCAGGTTAGAGTGCTAG

Upstream 100 bases:

>100_bases
ATTAGCGTTGATGATGTTTGCGCATTGGATGACCCAAATGATGATGGAGTTCTTTTTCGAACTCATCGAACGCTTGCCAC
AAGTTCTTTACTAAACCGAT

Downstream 100 bases:

>100_bases
GAGACTAAAATGGCAGAGTCAGACGGTCAAGAACGCACGGAAGACGCCACGCCCAAACGCTTGCAACAGGCCAAAGAGAA
AGGGCAGGTTGCAAGGTCAA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEYPTSLVLEWLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSFQGFLTVFEQIV
IGVAMGFVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQLFMLLATMFFLETDGHLKMLQLVVFSFKTLPI
GSGSLTSVDYRELALWLGIMFKTALAMSLSGIIALLTINLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYILGGLFSH
YELFWIQTEQQICRLIRLEC

Sequences:

>Translated_260_residues
MEYPTSLVLEWLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSFQGFLTVFEQIV
IGVAMGFVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQLFMLLATMFFLETDGHLKMLQLVVFSFKTLPI
GSGSLTSVDYRELALWLGIMFKTALAMSLSGIIALLTINLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYILGGLFSH
YELFWIQTEQQICRLIRLEC
>Mature_260_residues
MEYPTSLVLEWLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSFQGFLTVFEQIV
IGVAMGFVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQLFMLLATMFFLETDGHLKMLQLVVFSFKTLPI
GSGSLTSVDYRELALWLGIMFKTALAMSLSGIIALLTINLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYILGGLFSH
YELFWIQTEQQICRLIRLEC

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=219, Percent_Identity=39.7260273972603, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29038; Mature: 29038

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHEEEEECHHHHHHHHHCCC
>Mature Secondary Structure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HHEEEEECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]