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The map label for this gene is flgD [H]

Identifier: 218708803

GI number: 218708803

Start: 820994

End: 821704

Strand: Direct

Name: flgD [H]

Synonym: VS_0803

Alternate gene names: 218708803

Gene position: 820994-821704 (Clockwise)

Preceding gene: 218708802

Following gene: 218708804

Centisome position: 24.88

GC content: 46.55

Gene sequence:

>711_bases
ATGGCTGGAATCAACAATGTTGGTCAAAGCGGCTTGTCCTATGTTGACCAGCTGAAGAGTCTTCAAGATGGTGCTAAGAA
GCCCGATGAAACGACAGGTAAGCAAGATCTTAAACAAGATGACTTCTTATCGTTGTTGACTAAGCAACTTGCACAACAAG
ACCCTTTTAAGCCGGTTAGCAATGACCAGATGATTGCGCAAATGGCTTCATTTGCGACCGTAGATGGCATTGGCAAAATG
AATACACAGTTTGAAAGCTTGAATTCATCAATGACCTCTAACCAAGCACTGCAGGCATCTTCTTTGGTTGGCCGCGATGT
ATTGGTTCCTGGAGCGGCAGGTGTGAAACAAGGTGATGGCGGTATGGCGTCAATGGTTAAGCTTCCTCAGGCAATGGACA
ATGTAATGGTCCGTGTTGAGAATGAAGTTGGCCAATTGGTTCGCACTTTTGATATCGGCTCAAAACCATCGGGTGACACG
CGTGTTGAGTGGGACGGAAAAGACGAAGACGGTAATCCATTGCCGGCCGGTAAATACAACGTGAAAGCGTCGGGTTTATT
GGAAGGTGAGAACACAGAGTTCCAAGTGTCGAGTTATGCGAACGTGAACAGTGTGCTTCTTGGTAAAGGCGATGGCAACG
TACTACTCAATCTGGCTGGTTTTACATCGCCAGTACGACTTGCTGAAGTACTAGAAGTTGGTAAAGCGTAG

Upstream 100 bases:

>100_bases
CATCACGTGCGTATCAAACAAACGTACAGGTTGCTGACTCGAGTAAACAAATGCTGCTGCGTACGCTGCAGATGGGTCAA
TAAGGATAAGGAGGTAGCAA

Downstream 100 bases:

>100_bases
CTCTTTTTAGAGTGATTATGCTAGCTAGATTAGGAGAATATTGGAATGTCATATGTATCTTTAAGCGGTCTATCCGCTGC
ACAGTTAGACCTGAATACAA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MAGINNVGQSGLSYVDQLKSLQDGAKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKM
NTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKQGDGGMASMVKLPQAMDNVMVRVENEVGQLVRTFDIGSKPSGDT
RVEWDGKDEDGNPLPAGKYNVKASGLLEGENTEFQVSSYANVNSVLLGKGDGNVLLNLAGFTSPVRLAEVLEVGKA

Sequences:

>Translated_236_residues
MAGINNVGQSGLSYVDQLKSLQDGAKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKM
NTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKQGDGGMASMVKLPQAMDNVMVRVENEVGQLVRTFDIGSKPSGDT
RVEWDGKDEDGNPLPAGKYNVKASGLLEGENTEFQVSSYANVNSVLLGKGDGNVLLNLAGFTSPVRLAEVLEVGKA
>Mature_235_residues
AGINNVGQSGLSYVDQLKSLQDGAKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMN
TQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKQGDGGMASMVKLPQAMDNVMVRVENEVGQLVRTFDIGSKPSGDTR
VEWDGKDEDGNPLPAGKYNVKASGLLEGENTEFQVSSYANVNSVLLGKGDGNVLLNLAGFTSPVRLAEVLEVGKA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=184, Percent_Identity=37.5, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24956; Mature: 24825

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGINNVGQSGLSYVDQLKSLQDGAKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVS
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCC
NDQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKQGDG
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
GMASMVKLPQAMDNVMVRVENEVGQLVRTFDIGSKPSGDTRVEWDGKDEDGNPLPAGKYN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
VKASGLLEGENTEFQVSSYANVNSVLLGKGDGNVLLNLAGFTSPVRLAEVLEVGKA
CEECEEECCCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AGINNVGQSGLSYVDQLKSLQDGAKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCC
NDQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKQGDG
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
GMASMVKLPQAMDNVMVRVENEVGQLVRTFDIGSKPSGDTRVEWDGKDEDGNPLPAGKYN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
VKASGLLEGENTEFQVSSYANVNSVLLGKGDGNVLLNLAGFTSPVRLAEVLEVGKA
CEECEEECCCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]