Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
---|---|
Accession | NC_011753 |
Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is cheR1 [H]
Identifier: 218708800
GI number: 218708800
Start: 819080
End: 819907
Strand: Direct
Name: cheR1 [H]
Synonym: VS_0800
Alternate gene names: 218708800
Gene position: 819080-819907 (Clockwise)
Preceding gene: 218708799
Following gene: 218708801
Centisome position: 24.83
GC content: 43.48
Gene sequence:
>828_bases ATGACTGCTATAACAATAAGTGATCAAGAGTATCGCGATTTCAGCCGTTTCTTAGAATCTCAATGTGGCATTGTATTAGG TGACAGTAAGCAGTATTTAGTGCGCAGTCGTTTAAGCCCATTAGTAACGAAGTTTAATGTTGCTTCATTGTCTGATTTGC TAAGAGATGTAGTGACAGGTCGAAACCGTGAGTTGAGAGTGGCGGCAGTGGATGCTATGACGACTAACGAGACACTTTGG TTCCGAGATACTTATCCGTTTGCTGTACTAGCGGATAAACTTCTACCGGAAATAGCGGCAAATAAACGTCCTATCAAGAT TTGGTCTGCGGCAAGCTCTTCAGGTCAAGAACCATACTCAATGGCTATGACGATACTTGAGACCCAAGCACGTAAGCCGG GTATGTTGCCAAATGTATCGATTACCGCTACTGATATTTCAGCAAGTATGTTAGATATGTGCCGCACTGGCGCTTATGAC AACCTTGCCTTGGGCCGAGGACTTTCTCCTGAGCGCCGTCGCACTTTCTTTGAAGATGCTGGCGATGGTCGTATGAAAGT GAAAGACAACGTTAAGCGAATGGTAAACTTCCGTCCTCAGAACTTGATGGAGAGCTATGCACTGTTAGGCAAATTCGACA TTATCTTTTGTCGTAACGTGTTGATTTATTTCTCTCCGGATATGAAGTCAAAAGTACTTAACCAGATGGCAAATAGCCTG AATCCTGGTGGTTACCTGTTATTGGGTGCGTCTGAATCGTTAACCGGCTTAACAGATCGTTTTGAAATGGTTCGCTGTAA TCCAGGCATCATCTACAAATTAAAGTAA
Upstream 100 bases:
>100_bases TGGTTGAGCGTGTAGGGGCTAACTCCTTCATCGCGAAATTCAATCCTGATGAGCTTGGTGGCGCGGTTAAAGCTGCGTTA ACTAACTAAAAGAGACATTA
Downstream 100 bases:
>100_bases TTAGTGTCACCACTTTAAGGTGCAATATTACTGTCCAAATTTAAAACCCAGCCAAGTGCTGGGTTTTCTTTTTCTCATTT AATCTATATCTTTAAGTCAG
Product: methylase of chemotaxis methyl-accepting protein CheR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MTAITISDQEYRDFSRFLESQCGIVLGDSKQYLVRSRLSPLVTKFNVASLSDLLRDVVTGRNRELRVAAVDAMTTNETLW FRDTYPFAVLADKLLPEIAANKRPIKIWSAASSSGQEPYSMAMTILETQARKPGMLPNVSITATDISASMLDMCRTGAYD NLALGRGLSPERRRTFFEDAGDGRMKVKDNVKRMVNFRPQNLMESYALLGKFDIIFCRNVLIYFSPDMKSKVLNQMANSL NPGGYLLLGASESLTGLTDRFEMVRCNPGIIYKLK
Sequences:
>Translated_275_residues MTAITISDQEYRDFSRFLESQCGIVLGDSKQYLVRSRLSPLVTKFNVASLSDLLRDVVTGRNRELRVAAVDAMTTNETLW FRDTYPFAVLADKLLPEIAANKRPIKIWSAASSSGQEPYSMAMTILETQARKPGMLPNVSITATDISASMLDMCRTGAYD NLALGRGLSPERRRTFFEDAGDGRMKVKDNVKRMVNFRPQNLMESYALLGKFDIIFCRNVLIYFSPDMKSKVLNQMANSL NPGGYLLLGASESLTGLTDRFEMVRCNPGIIYKLK >Mature_274_residues TAITISDQEYRDFSRFLESQCGIVLGDSKQYLVRSRLSPLVTKFNVASLSDLLRDVVTGRNRELRVAAVDAMTTNETLWF RDTYPFAVLADKLLPEIAANKRPIKIWSAASSSGQEPYSMAMTILETQARKPGMLPNVSITATDISASMLDMCRTGAYDN LALGRGLSPERRRTFFEDAGDGRMKVKDNVKRMVNFRPQNLMESYALLGKFDIIFCRNVLIYFSPDMKSKVLNQMANSLN PGGYLLLGASESLTGLTDRFEMVRCNPGIIYKLK
Specific function: Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP [H]
COG id: COG1352
COG function: function code NT; Methylase of chemotaxis methyl-accepting proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cheR-type methyltransferase domain [H]
Homologues:
Organism=Escherichia coli, GI1788193, Length=266, Percent_Identity=32.7067669172932, Blast_Score=145, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022642 - InterPro: IPR000780 - InterPro: IPR022641 [H]
Pfam domain/function: PF01739 CheR; PF03705 CheR_N [H]
EC number: =2.1.1.80 [H]
Molecular weight: Translated: 30844; Mature: 30713
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: PS50123 CHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAITISDQEYRDFSRFLESQCGIVLGDSKQYLVRSRLSPLVTKFNVASLSDLLRDVVTG CEEEEECCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RNRELRVAAVDAMTTNETLWFRDTYPFAVLADKLLPEIAANKRPIKIWSAASSSGQEPYS CCCEEEEEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH MAMTILETQARKPGMLPNVSITATDISASMLDMCRTGAYDNLALGRGLSPERRRTFFEDA HHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCC GDGRMKVKDNVKRMVNFRPQNLMESYALLGKFDIIFCRNVLIYFSPDMKSKVLNQMANSL CCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCHHHEEECCEEEEECCCHHHHHHHHHHHCC NPGGYLLLGASESLTGLTDRFEMVRCNPGIIYKLK CCCCEEEEECCCCCCCHHHHHEEEEECCCEEEEEC >Mature Secondary Structure TAITISDQEYRDFSRFLESQCGIVLGDSKQYLVRSRLSPLVTKFNVASLSDLLRDVVTG EEEEECCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RNRELRVAAVDAMTTNETLWFRDTYPFAVLADKLLPEIAANKRPIKIWSAASSSGQEPYS CCCEEEEEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH MAMTILETQARKPGMLPNVSITATDISASMLDMCRTGAYDNLALGRGLSPERRRTFFEDA HHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCC GDGRMKVKDNVKRMVNFRPQNLMESYALLGKFDIIFCRNVLIYFSPDMKSKVLNQMANSL CCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCHHHEEECCEEEEECCCHHHHHHHHHHHCC NPGGYLLLGASESLTGLTDRFEMVRCNPGIIYKLK CCCCEEEEECCCCCCCHHHHHEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301; 10400589 [H]