Click here to switch to the map view.

The map label for this gene is yjjK [C]

Identifier: 218708585

GI number: 218708585

Start: 573651

End: 575318

Strand: Reverse

Name: yjjK [C]

Synonym: VS_0551

Alternate gene names: 218708585

Gene position: 575318-573651 (Counterclockwise)

Preceding gene: 218708588

Following gene: 218708584

Centisome position: 17.44

GC content: 45.5

Gene sequence:

>1668_bases
ATGGCTGAATACGTATATACCATGTCTCGGGTGAGCAAAACTGTTCCACCTAAGCGTCAAATTCTTAAAGACATTTCTCT
TAGCTTTTTTCCTGGCGCTAAAATCGGTGTTTTGGGTCTAAATGGTTCAGGTAAATCTACCCTACTACGTATCATGGCTG
GTATTGATACTGATATTGATGGTGAAGCACGTGCACAACAAGGTCTAAAAGTAGGTTACCTACCTCAAGAACCTGTACTA
GACGAATCAAAAACCGTTCGTGAAATCGTAGAAGAAGCGGTTTCAGATGTTGCTGACGCACTTAAGCGCATCGACGCAGT
ATATGCTGCTTACGCAGAACCTGATGCAGATTTCGATGCATTAGCGAAAGAGCAAGGTGAGCTTGAAGCACTGATCCAAG
CAAAAGATGGTCATAACCTAGAAACAGCTCTAGAGCGAGCTGCAGATGCACTTCGTCTTCCTGAGTGGGATGCGAAAATC
GAATTCCTCTCAGGTGGTGAACGTCGTCGTGTTGCTATCTGTCGTCTACTTCTTGAGAAGCCAGACATGCTGCTTCTTGA
TGAACCAACCAACCACCTGGATGCAGAATCAGTTGCTTGGCTTGAGCATTTCCTTGTTGATTACAGCGGTACTGTTGTGG
CGATTACCCACGACCGTTACTTCCTAGACAACGCTGCAGGTTGGATTCTAGAACTTGACCGTGGTGAAGGTATCCCATGG
GAAGGTAACTACACATCTTGGCTAGAACAGAAAGATGAGCGTTTGAAGCAAGAAAAAGCAGGCGAAAGCGCACGTCAAAA
AACGATTGAGAAAGAACTTGAATGGGTTCGTCAAAACCCTAAAGGTCGTCAAGCTAAGTCTAAAGCTCGTATGGCTCGTT
TTGAAGAAATGACGACTGGCCAATACCAGAAGCGTAACGAAACCAACGAATTGTTCATCCCACCAGGTGAGCGTTTAGGT
GACAAGGTACTTGAAGTTAAGAACCTAACGAAGTCATTTGGTGATCGCGTTCTTATCGATGACCTATCATTCAGCATGCC
TAAAGGCGCTATCGTTGGTATCGTTGGTGCCAATGGTGCGGGTAAATCAACACTATTCAAGATGCTAAGTGGCGCAGAAC
AGCCAGATTCAGGCACAGTTGAACTTGGCGAAACGGTTAAGCTTGCTTCTGTTGATCAGTTCCGTGACAGCATGGACGAC
ACAAAAACAGTATTCCAAGAGATCTCTGAAGGCGCTGATATCATTAAGATCAACAACTTCGAAATTCCTGCTCGTGCATA
CTGCTCTCGTTTCAACTTCAAAGGCAACGACCAACAGAAGATCATCGGTCAGCTTTCAGGTGGTGAACGCAACCGTGTTC
ACCTAGCGAAACTGCTAAAAGCGGGCGGTAACGTACTGCTACTCGATGAACCAACCAATGACCTTGATGTTGAGACGCTA
CGAGCTCTTGAAGAAGCACTACTTGAGTTCCCTGGCTGTGCAATGGTTATCTCGCATGACCGTTGGTTCCTTGACCGTAT
TGCGACCCATATCTTAGACTACCGTGATGAAGGTCAAGTTAACTTCTACGAAGGTAACTATACTGAATATACAGAGTGGC
TGAAAAAGACTCTAGGTGCACAAGCGGCAGAACCTCACCGCATCAAATACAAACGTATTGCAAAGTAA

Upstream 100 bases:

>100_bases
ATTAGTTCAAGAATGGCTTTTCTGTCCTAGGAGTAACATCTTTGAGGATATTGGTATAAAATAGCAAACAATTTTGAACA
ATAATTAGGATCGATCGGCA

Downstream 100 bases:

>100_bases
ATAAGCTTGTATTTTGAACAAAGGCCGCGATAATAGCGGCCTTTGATATATCTGGTTATATGTTACGTATTGATATAGAG
AGATTAGTTATGATTGAAAG

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MAEYVYTMSRVSKTVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTDIDGEARAQQGLKVGYLPQEPVL
DESKTVREIVEEAVSDVADALKRIDAVYAAYAEPDADFDALAKEQGELEALIQAKDGHNLETALERAADALRLPEWDAKI
EFLSGGERRRVAICRLLLEKPDMLLLDEPTNHLDAESVAWLEHFLVDYSGTVVAITHDRYFLDNAAGWILELDRGEGIPW
EGNYTSWLEQKDERLKQEKAGESARQKTIEKELEWVRQNPKGRQAKSKARMARFEEMTTGQYQKRNETNELFIPPGERLG
DKVLEVKNLTKSFGDRVLIDDLSFSMPKGAIVGIVGANGAGKSTLFKMLSGAEQPDSGTVELGETVKLASVDQFRDSMDD
TKTVFQEISEGADIIKINNFEIPARAYCSRFNFKGNDQQKIIGQLSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETL
RALEEALLEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYTEYTEWLKKTLGAQAAEPHRIKYKRIAK

Sequences:

>Translated_555_residues
MAEYVYTMSRVSKTVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTDIDGEARAQQGLKVGYLPQEPVL
DESKTVREIVEEAVSDVADALKRIDAVYAAYAEPDADFDALAKEQGELEALIQAKDGHNLETALERAADALRLPEWDAKI
EFLSGGERRRVAICRLLLEKPDMLLLDEPTNHLDAESVAWLEHFLVDYSGTVVAITHDRYFLDNAAGWILELDRGEGIPW
EGNYTSWLEQKDERLKQEKAGESARQKTIEKELEWVRQNPKGRQAKSKARMARFEEMTTGQYQKRNETNELFIPPGERLG
DKVLEVKNLTKSFGDRVLIDDLSFSMPKGAIVGIVGANGAGKSTLFKMLSGAEQPDSGTVELGETVKLASVDQFRDSMDD
TKTVFQEISEGADIIKINNFEIPARAYCSRFNFKGNDQQKIIGQLSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETL
RALEEALLEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYTEYTEWLKKTLGAQAAEPHRIKYKRIAK
>Mature_554_residues
AEYVYTMSRVSKTVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTDIDGEARAQQGLKVGYLPQEPVLD
ESKTVREIVEEAVSDVADALKRIDAVYAAYAEPDADFDALAKEQGELEALIQAKDGHNLETALERAADALRLPEWDAKIE
FLSGGERRRVAICRLLLEKPDMLLLDEPTNHLDAESVAWLEHFLVDYSGTVVAITHDRYFLDNAAGWILELDRGEGIPWE
GNYTSWLEQKDERLKQEKAGESARQKTIEKELEWVRQNPKGRQAKSKARMARFEEMTTGQYQKRNETNELFIPPGERLGD
KVLEVKNLTKSFGDRVLIDDLSFSMPKGAIVGIVGANGAGKSTLFKMLSGAEQPDSGTVELGETVKLASVDQFRDSMDDT
KTVFQEISEGADIIKINNFEIPARAYCSRFNFKGNDQQKIIGQLSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETLR
ALEEALLEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYTEYTEWLKKTLGAQAAEPHRIKYKRIAK

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=530, Percent_Identity=27.5471698113208, Blast_Score=173, Evalue=4e-43,
Organism=Homo sapiens, GI10947137, Length=544, Percent_Identity=28.6764705882353, Blast_Score=169, Evalue=7e-42,
Organism=Homo sapiens, GI27881506, Length=544, Percent_Identity=28.6764705882353, Blast_Score=169, Evalue=8e-42,
Organism=Homo sapiens, GI69354671, Length=577, Percent_Identity=27.0363951473137, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI10947135, Length=577, Percent_Identity=27.0363951473137, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI31657092, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI171184400, Length=252, Percent_Identity=26.984126984127, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI116734710, Length=188, Percent_Identity=29.7872340425532, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI2367384, Length=555, Percent_Identity=78.9189189189189, Blast_Score=915, Evalue=0.0,
Organism=Escherichia coli, GI1787182, Length=516, Percent_Identity=34.3023255813954, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI1789751, Length=541, Percent_Identity=31.4232902033272, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1787041, Length=524, Percent_Identity=31.2977099236641, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI48994943, Length=490, Percent_Identity=24.8979591836735, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081782, Length=579, Percent_Identity=23.6614853195164, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87081709, Length=197, Percent_Identity=28.4263959390863, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87081791, Length=165, Percent_Identity=36.969696969697, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788225, Length=225, Percent_Identity=27.5555555555556, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=29.1079812206573, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788450, Length=220, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788165, Length=185, Percent_Identity=30.2702702702703, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=26.8041237113402, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787164, Length=188, Percent_Identity=27.6595744680851, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1790467, Length=222, Percent_Identity=28.8288288288288, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=28.7128712871287, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787089, Length=231, Percent_Identity=24.6753246753247, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1790190, Length=200, Percent_Identity=28, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=26.6375545851528, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=26.9406392694064, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786703, Length=229, Percent_Identity=28.3842794759825, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788644, Length=232, Percent_Identity=26.2931034482759, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI48995001, Length=238, Percent_Identity=25.2100840336134, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=548, Percent_Identity=25.5474452554745, Blast_Score=178, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17555318, Length=544, Percent_Identity=27.3897058823529, Blast_Score=178, Evalue=7e-45,
Organism=Caenorhabditis elegans, GI17553372, Length=535, Percent_Identity=29.5327102803738, Blast_Score=169, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI212646699, Length=186, Percent_Identity=31.1827956989247, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=549, Percent_Identity=27.1402550091075, Blast_Score=186, Evalue=1e-47,
Organism=Saccharomyces cerevisiae, GI6320874, Length=539, Percent_Identity=28.5714285714286, Blast_Score=184, Evalue=4e-47,
Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=26.7352185089974, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6324314, Length=378, Percent_Identity=25.6613756613757, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6323278, Length=367, Percent_Identity=25.6130790190736, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6320266, Length=377, Percent_Identity=23.8726790450928, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24666836, Length=537, Percent_Identity=29.0502793296089, Blast_Score=189, Evalue=5e-48,
Organism=Drosophila melanogaster, GI24642252, Length=546, Percent_Identity=28.2051282051282, Blast_Score=182, Evalue=6e-46,
Organism=Drosophila melanogaster, GI18859989, Length=546, Percent_Identity=28.2051282051282, Blast_Score=182, Evalue=6e-46,
Organism=Drosophila melanogaster, GI24641342, Length=538, Percent_Identity=28.8104089219331, Blast_Score=181, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24641565, Length=267, Percent_Identity=28.4644194756554, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022374
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 62159; Mature: 62028

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEYVYTMSRVSKTVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTDID
CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCC
GEARAQQGLKVGYLPQEPVLDESKTVREIVEEAVSDVADALKRIDAVYAAYAEPDADFDA
CHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LAKEQGELEALIQAKDGHNLETALERAADALRLPEWDAKIEFLSGGERRRVAICRLLLEK
HHHHCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCC
PDMLLLDEPTNHLDAESVAWLEHFLVDYSGTVVAITHDRYFLDNAAGWILELDRGEGIPW
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCEEEEEECCCCCCC
EGNYTSWLEQKDERLKQEKAGESARQKTIEKELEWVRQNPKGRQAKSKARMARFEEMTTG
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
QYQKRNETNELFIPPGERLGDKVLEVKNLTKSFGDRVLIDDLSFSMPKGAIVGIVGANGA
CHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
GKSTLFKMLSGAEQPDSGTVELGETVKLASVDQFRDSMDDTKTVFQEISEGADIIKINNF
CHHHHHHHHCCCCCCCCCCEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
EIPARAYCSRFNFKGNDQQKIIGQLSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETL
CCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH
RALEEALLEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYTEYTEWLKKTLGA
HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCC
QAAEPHRIKYKRIAK
CCCCCCCCCHHHCCC
>Mature Secondary Structure 
AEYVYTMSRVSKTVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTDID
CHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCC
GEARAQQGLKVGYLPQEPVLDESKTVREIVEEAVSDVADALKRIDAVYAAYAEPDADFDA
CHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LAKEQGELEALIQAKDGHNLETALERAADALRLPEWDAKIEFLSGGERRRVAICRLLLEK
HHHHCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCC
PDMLLLDEPTNHLDAESVAWLEHFLVDYSGTVVAITHDRYFLDNAAGWILELDRGEGIPW
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCEEEEEECCCCCCC
EGNYTSWLEQKDERLKQEKAGESARQKTIEKELEWVRQNPKGRQAKSKARMARFEEMTTG
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
QYQKRNETNELFIPPGERLGDKVLEVKNLTKSFGDRVLIDDLSFSMPKGAIVGIVGANGA
CHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCC
GKSTLFKMLSGAEQPDSGTVELGETVKLASVDQFRDSMDDTKTVFQEISEGADIIKINNF
CHHHHHHHHCCCCCCCCCCEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
EIPARAYCSRFNFKGNDQQKIIGQLSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETL
CCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH
RALEEALLEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYTEYTEWLKKTLGA
HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCC
QAAEPHRIKYKRIAK
CCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]