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The map label for this gene is ygiM [H]

Identifier: 218708447

GI number: 218708447

Start: 416210

End: 416821

Strand: Reverse

Name: ygiM [H]

Synonym: VS_0410

Alternate gene names: 218708447

Gene position: 416821-416210 (Counterclockwise)

Preceding gene: 218708448

Following gene: 218708444

Centisome position: 12.63

GC content: 45.59

Gene sequence:

>612_bases
GTGAAAAAATTGATTAGCTTAGTTTTGTTCGCAATGCTTGCGGCTCCAGCTGCCTTTGCTCAAGACCGTTATATTGCTGA
CAAACTATTTACTTATATGCACTCTGGCCCAAACAATACTTTCCGTATCATAGGTAGTATTGATGCCGGTGAGAAAATCA
CCTACCTGCAAACGAACAAGAGCACGGGTTACACTCAGGTTCAAGATAACCGAGGACGCAAAGGTTGGGTTGAGAGTAAG
TTCGTAAGCACGAAAGAAAGTATGGCACTGCGCATGCCTAAGCTAGAGAAAGAACTCTCTGAAGTAAAAGGCAAACTGGC
GAATGCTCGCCAAAGTGCTGACAGCGAAAAAGCAGGTCTCGCAAGCTCTCTAGACTCTCGCAACAAGCAGATTGCTGAAC
TAGAGCAGAACTACAGTGAGATTAGCCAACAGCTAACGAGCTCTCAAACTGAGAACCGTCAACTACGCGCTAAGCTAGAT
ACTCAAAAAGATGACTTACTATTGAAGTACTTCATGTACGGTGGTGGTGTTGCTGGTATTGGTCTACTTCTTGGCCTTGT
TCTGCCACACATCATGCCTCGTCGTAGAAAGTCACCAAACGGCTGGGCGTAA

Upstream 100 bases:

>100_bases
GCCTCCCTTCTTTGTTGCACCATATAAAAAAACTAAATATTATTTGCTCATTGAGGCTGACTCATACGCCTACCCAATTT
GAATCGTTAAAGGATTTACT

Downstream 100 bases:

>100_bases
GCCTCGCATTTGCTAGTAGGTTCAGTATCGAATATCAAAAAGGAGCACCGAGGTACTCCTTTTTATTTGTCTGGATTTAT
CATTCAAGTCACAGCGCTAA

Product: SH3 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MKKLISLVLFAMLAAPAAFAQDRYIADKLFTYMHSGPNNTFRIIGSIDAGEKITYLQTNKSTGYTQVQDNRGRKGWVESK
FVSTKESMALRMPKLEKELSEVKGKLANARQSADSEKAGLASSLDSRNKQIAELEQNYSEISQQLTSSQTENRQLRAKLD
TQKDDLLLKYFMYGGGVAGIGLLLGLVLPHIMPRRRKSPNGWA

Sequences:

>Translated_203_residues
MKKLISLVLFAMLAAPAAFAQDRYIADKLFTYMHSGPNNTFRIIGSIDAGEKITYLQTNKSTGYTQVQDNRGRKGWVESK
FVSTKESMALRMPKLEKELSEVKGKLANARQSADSEKAGLASSLDSRNKQIAELEQNYSEISQQLTSSQTENRQLRAKLD
TQKDDLLLKYFMYGGGVAGIGLLLGLVLPHIMPRRRKSPNGWA
>Mature_203_residues
MKKLISLVLFAMLAAPAAFAQDRYIADKLFTYMHSGPNNTFRIIGSIDAGEKITYLQTNKSTGYTQVQDNRGRKGWVESK
FVSTKESMALRMPKLEKELSEVKGKLANARQSADSEKAGLASSLDSRNKQIAELEQNYSEISQQLTSSQTENRQLRAKLD
TQKDDLLLKYFMYGGGVAGIGLLLGLVLPHIMPRRRKSPNGWA

Specific function: Unknown

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1605 [H]

Homologues:

Organism=Escherichia coli, GI1789435, Length=196, Percent_Identity=35.7142857142857, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003646
- InterPro:   IPR013247
- InterPro:   IPR016476 [H]

Pfam domain/function: PF08239 SH3_3 [H]

EC number: NA

Molecular weight: Translated: 22648; Mature: 22648

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLISLVLFAMLAAPAAFAQDRYIADKLFTYMHSGPNNTFRIIGSIDAGEKITYLQTNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCC
STGYTQVQDNRGRKGWVESKFVSTKESMALRMPKLEKELSEVKGKLANARQSADSEKAGL
CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ASSLDSRNKQIAELEQNYSEISQQLTSSQTENRQLRAKLDTQKDDLLLKYFMYGGGVAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
GLLLGLVLPHIMPRRRKSPNGWA
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKLISLVLFAMLAAPAAFAQDRYIADKLFTYMHSGPNNTFRIIGSIDAGEKITYLQTNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCC
STGYTQVQDNRGRKGWVESKFVSTKESMALRMPKLEKELSEVKGKLANARQSADSEKAGL
CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ASSLDSRNKQIAELEQNYSEISQQLTSSQTENRQLRAKLDTQKDDLLLKYFMYGGGVAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
GLLLGLVLPHIMPRRRKSPNGWA
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]