Click here to switch to the map view.

The map label for this gene is araJ [H]

Identifier: 218703677

GI number: 218703677

Start: 466558

End: 467742

Strand: Reverse

Name: araJ [H]

Synonym: ECUMN_0433

Alternate gene names: 218703677

Gene position: 467742-466558 (Counterclockwise)

Preceding gene: 218703678

Following gene: 218703675

Centisome position: 8.99

GC content: 50.8

Gene sequence:

>1185_bases
ATGAAAAAAGTTATTTTATCTTTGGCTCTGGGCACGTTTGGTTTGGGGATGGCCGAATTTGGCATTATGGGCGTGCTCAC
GGAGCTGGCGCATAACGTAGGAATTTCAATTCCTGCTGCCGGGCATATGATCTCGTATTATGCGCTGGGGGTGGTGGTCG
GTGCGCCAATCATCGCACTCTTTTCCAGCCGCTACTCACTCAAACATATCTTATTGTTTCTGGTGGCGTTGTGCGTCATT
GGCAACGCCATGTTCACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTTTCCGGCTTTCCGCATGGTGC
ATTTTTTGGCGTCGGCGCGATCGTGTTATCGAAAATTATCAAACCCGGCAAAGTCACCGCCGCCGTGGCGGGGATGGTTT
CCGGGATGACAGTCGCCAATTTGCTGGGCATTCCGCTGGGAACGTATTTAAGTCAGGAATTTAGCTGGCGTTACACCTTT
TTATTGATCGCTGTTTTTAATATTGCGGTGATGGCATCGGTCTATTTTTGGGTGCCGGATATTCGCGACGAGGCGAAAGG
GAAGCTACGCGAACAATTTCACTTTTTGCGCAGCCCGGCCCCGTGGTTAATTTTCGCCGCCACCATGTTTGGCAACGCAG
GTGTATTTGCCTGGTTCAGCTACGTAAAGCCATACATGATGTTTATTTCCGGTTTTTCGGAAACGGCGATGACTTTTATT
ATGATGTTAGTTGGGCTAGGGATGGTGCTGGGGAATGTGCTAAGTGGCCGGATTTCAGGACGTTATTCACCACTGCGCAT
TGCGGCAGTAACTGACTTTATTATTGTGCTGGCACTGCTGATGCTCTTTTTCTTCGGCGGCATGAAAACAACGTCGCTTA
TTTTTGCATTTTTTTGTTGCGCGGGATTATTTGCCCTTTCAGCACCACTGCAAATATTGTTACTGCAAAATGCCAAAGGC
GGAGAGTTATTAGGTGCCGCAGGTGGGCAAATAGCGTTTAACCTCGGTAGCGCCGTCGGCGCATATTGCGGTGGTATGAT
GCTGACGCTGGGGCTGGCATATAATTACGTGGCGCTACCTGCCGCCCTGCTTTCGTTTGCTGCGATGTCGTCGTTGCTGC
TGTATGGTCGCTATAAGCGCCAGCAAGCGGCGGATAGTCCGGTGCTGGCGAAACCAGTGGGGTAG

Upstream 100 bases:

>100_bases
AGGGGCGAATTATCTCTTGGCCTCGCTGGTCGTTATCCTGCAAGCTATCACTTTATTGGCTACGGTGATTAGTAGCCGTT
CTGGTGGTTGTGATGGTGGT

Downstream 100 bases:

>100_bases
ATTGCAGTCACGGAGCACGTTGCTTATTGCCGGATGCGGCGTGAACGCCTTATCCGCCCTACGCGGTTCTGGCACATTTT
GCAGGCCTGATAAGACGCGG

Product: MFS transport protein AraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFI
MMLVGLGMVLGNVLSGRISGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTTSLIFAFFCCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSPVLAKPVG

Sequences:

>Translated_394_residues
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFI
MMLVGLGMVLGNVLSGRISGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTTSLIFAFFCCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSPVLAKPVG
>Mature_394_residues
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFI
MMLVGLGMVLGNVLSGRISGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTTSLIFAFFCCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSPVLAKPVG

Specific function: May be involved in either the transport or processing of arabinose polymers [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=394, Percent_Identity=98.4771573604061, Blast_Score=764, Evalue=0.0,
Organism=Escherichia coli, GI1787947, Length=379, Percent_Identity=32.1899736147757, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI145693198, Length=289, Percent_Identity=24.2214532871972, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787808, Length=259, Percent_Identity=25.8687258687259, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41959; Mature: 41959

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744033; 9278503 [H]